Table: Gene sets enriched in phenotype 2 (6 samples) [plain text format]

	GS follow link to MSigDB	GS DETAILS	SIZE	ES	NES	NOM p-val	FDR q-val	FWER p-val	RANK AT MAX	LEADING EDGE
1	HALLMARK_MITOTIC_SPINDLE	Details ...	186	0.42	1.77	0.016	0.069	0.042	2548	tags=34%, list=22%, signal=43%
2	HALLMARK_BILE_ACID_METABOLISM	Details ...	72	0.45	1.69	0.000	0.078	0.084	2232	tags=36%, list=19%, signal=44%
3	HALLMARK_PEROXISOME	Details ...	79	0.43	1.67	0.020	0.067	0.098	2517	tags=33%, list=22%, signal=42%
4	HALLMARK_G2M_CHECKPOINT	Details ...	189	0.45	1.64	0.060	0.066	0.116	2687	tags=39%, list=23%, signal=49%
5	HALLMARK_ANDROGEN_RESPONSE	Details ...	74	0.41	1.61	0.012	0.070	0.151	2265	tags=34%, list=20%, signal=42%
6	HALLMARK_SPERMATOGENESIS	Details ...	67	0.42	1.54	0.027	0.114	0.256	2794	tags=37%, list=24%, signal=49%
7	HALLMARK_E2F_TARGETS	Details ...	193	0.44	1.47	0.137	0.167	0.357	2775	tags=36%, list=24%, signal=46%
8	HALLMARK_ESTROGEN_RESPONSE_LATE	Details ...	109	0.34	1.44	0.019	0.177	0.391	1236	tags=17%, list=11%, signal=18%
9	HALLMARK_WNT_BETA_CATENIN_SIGNALING	Details ...	26	0.45	1.43	0.064	0.171	0.410	1349	tags=27%, list=12%, signal=30%
10	HALLMARK_GLYCOLYSIS	Details ...	140	0.30	1.42	0.012	0.160	0.420	1995	tags=20%, list=17%, signal=24%
11	HALLMARK_DNA_REPAIR	Details ...	140	0.35	1.42	0.049	0.147	0.423	3536	tags=37%, list=30%, signal=53%
12	HALLMARK_ADIPOGENESIS	Details ...	162	0.30	1.37	0.060	0.197	0.513	2517	tags=25%, list=22%, signal=31%
13	HALLMARK_HEME_METABOLISM	Details ...	160	0.28	1.34	0.077	0.231	0.579	3025	tags=31%, list=26%, signal=41%
14	HALLMARK_TNFA_SIGNALING_VIA_NFKB	Details ...	118	0.29	1.33	0.068	0.230	0.598	1875	tags=19%, list=16%, signal=22%
15	HALLMARK_KRAS_SIGNALING_UP	Details ...	93	0.30	1.32	0.085	0.229	0.616	3699	tags=37%, list=32%, signal=53%
16	HALLMARK_CHOLESTEROL_HOMEOSTASIS	Details ...	49	0.34	1.31	0.090	0.221	0.630	3762	tags=37%, list=32%, signal=54%
17	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION	Details ...	61	0.32	1.31	0.053	0.214	0.642	3475	tags=34%, list=30%, signal=49%
18	HALLMARK_FATTY_ACID_METABOLISM	Details ...	115	0.31	1.30	0.085	0.210	0.655	2593	tags=28%, list=22%, signal=35%
19	HALLMARK_XENOBIOTIC_METABOLISM	Details ...	109	0.31	1.29	0.125	0.210	0.683	2053	tags=20%, list=18%, signal=24%
20	HALLMARK_HYPOXIA	Details ...	121	0.29	1.28	0.092	0.210	0.695	1778	tags=20%, list=15%, signal=23%
21	HALLMARK_IL6_JAK_STAT3_SIGNALING		49	0.34	1.28	0.162	0.202	0.699	2414	tags=24%, list=21%, signal=31%
22	HALLMARK_MTORC1_SIGNALING		177	0.26	1.24	0.118	0.242	0.748	2914	tags=26%, list=25%, signal=34%
23	HALLMARK_UV_RESPONSE_UP		107	0.29	1.24	0.179	0.234	0.749	3576	tags=36%, list=31%, signal=51%
24	HALLMARK_TGF_BETA_SIGNALING		44	0.31	1.22	0.132	0.250	0.778	1923	tags=23%, list=17%, signal=27%
25	HALLMARK_APICAL_JUNCTION		103	0.29	1.18	0.215	0.297	0.829	4196	tags=45%, list=36%, signal=69%
26	HALLMARK_APOPTOSIS		112	0.27	1.16	0.186	0.310	0.849	2550	tags=24%, list=22%, signal=31%
27	HALLMARK_UV_RESPONSE_DN		100	0.24	1.11	0.272	0.400	0.904	3493	tags=30%, list=30%, signal=43%
28	HALLMARK_KRAS_SIGNALING_DN		57	0.29	1.11	0.313	0.386	0.904	2231	tags=26%, list=19%, signal=32%
29	HALLMARK_ESTROGEN_RESPONSE_EARLY		111	0.26	1.10	0.312	0.387	0.906	3603	tags=32%, list=31%, signal=47%
30	HALLMARK_P53_PATHWAY		146	0.21	1.01	0.420	0.545	0.966	2351	tags=21%, list=20%, signal=25%
31	HALLMARK_COAGULATION		55	0.23	0.98	0.530	0.608	0.971	2665	tags=25%, list=23%, signal=33%
32	HALLMARK_PROTEIN_SECRETION		87	0.23	0.98	0.490	0.590	0.971	2778	tags=25%, list=24%, signal=33%
33	HALLMARK_APICAL_SURFACE		16	0.32	0.96	0.502	0.605	0.978	3876	tags=38%, list=33%, signal=56%
34	HALLMARK_ALLOGRAFT_REJECTION		100	0.22	0.94	0.555	0.646	0.991	3813	tags=33%, list=33%, signal=49%
35	HALLMARK_NOTCH_SIGNALING		21	0.28	0.92	0.549	0.671	0.992	784	tags=14%, list=7%, signal=15%
36	HALLMARK_IL2_STAT5_SIGNALING		126	0.22	0.89	0.642	0.714	0.995	2659	tags=21%, list=23%, signal=27%
37	HALLMARK_HEDGEHOG_SIGNALING		22	0.26	0.89	0.671	0.715	0.995	1480	tags=14%, list=13%, signal=16%
38	HALLMARK_COMPLEMENT		107	0.18	0.85	0.763	0.773	1.000	2988	tags=22%, list=26%, signal=30%
39	HALLMARK_OXIDATIVE_PHOSPHORYLATION		178	0.19	0.84	0.729	0.777	1.000	2683	tags=21%, list=23%, signal=27%
40	HALLMARK_REACTIVE_OXYGEN_SPECIES_PATHWAY		43	0.20	0.81	0.814	0.838	1.000	1715	tags=14%, list=15%, signal=16%
41	HALLMARK_INFLAMMATORY_RESPONSE		106	0.17	0.78	0.911	0.861	1.000	3530	tags=29%, list=30%, signal=42%
42	HALLMARK_PI3K_AKT_MTOR_SIGNALING		89	0.16	0.77	0.937	0.862	1.000	4330	tags=33%, list=37%, signal=52%
43	HALLMARK_MYC_TARGETS_V2		57	0.23	0.77	0.748	0.845	1.000	2067	tags=21%, list=18%, signal=25%
44	HALLMARK_MYC_TARGETS_V1		185	0.20	0.71	0.771	0.902	1.000	3900	tags=29%, list=34%, signal=42%