GimmeMotifs v0.18.0

GimmeMotifs_1 (Gimme)

Motif and consensus

	GM.5.0.Sox.0014 1.30e-01
GATAAGGAmTGAAATA	Database match

Significance and enrichment

gc enrichment 18.36 p-value 0.00 ROC_AUC 0.603 MNCP 3.236

Positional Preference Plot

(Fullscreen)

GimmeMotifs_2 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0080 1.94e-03
mAAGGAATGCATTCCwTkss	Database match

Significance and enrichment

gc enrichment 19.55 p-value 0.00 ROC_AUC 0.603 MNCP 3.318

Positional Preference Plot

(Fullscreen)

GimmeMotifs_3 (Gimme)

Motif and consensus

	GM.5.0.SMAD.0010 3.59e-01
ArACrGmCrCTCysrGAGnG	Database match

Significance and enrichment

gc enrichment 14.87 p-value 0.00 ROC_AUC 0.579 MNCP 2.778

Positional Preference Plot

(Fullscreen)

GimmeMotifs_4 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0195 2.44e-03
GCTTrCTAGGATwrGGAA	Database match

Significance and enrichment

gc enrichment 17.01 p-value 0.00 ROC_AUC 0.564 MNCP 2.914

Positional Preference Plot

(Fullscreen)

GimmeMotifs_5 (Gimme)

Motif and consensus

	GM.5.0.Nuclear_receptor.0039 5.87e-01
GCCGTTTATAGACCTCCC	Database match

Significance and enrichment

gc enrichment 15.13 p-value 0.00 ROC_AUC 0.577 MNCP 2.808

Positional Preference Plot

(Fullscreen)

GimmeMotifs_6 (Gimme)

Motif and consensus

	GM.5.0.SMAD.0017 1.32e-02
AAGrCAGACAnyCCCAGA	Database match

Significance and enrichment

gc enrichment 14.38 p-value 0.00 ROC_AUC 0.562 MNCP 2.696

Positional Preference Plot

(Fullscreen)

GimmeMotifs_7 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0042 1.62e-02
CTGTCTTATGCrGTTG	Database match

Significance and enrichment

gc enrichment 13.93 p-value 0.00 ROC_AUC 0.566 MNCP 2.687

Positional Preference Plot

(Fullscreen)

GimmeMotifs_8 (Gimme)

Motif and consensus

	GM.5.0.TEA.0003 0.00e+00
CATTCC	Database match

Significance and enrichment

gc enrichment 1.36 p-value 0.00 ROC_AUC 0.639 MNCP 1.720

Positional Preference Plot

(Fullscreen)

GimmeMotifs_9 (Gimme)

Motif and consensus

	GM.5.0.Rel.0022 8.25e-04
TTTCCynnyCCT	Database match

Significance and enrichment

gc enrichment 10.87 p-value 0.00 ROC_AUC 0.591 MNCP 2.310

Positional Preference Plot

(Fullscreen)

GimmeMotifs_10 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0114 5.68e-05
yTCCCAGmrnGG	Database match

Significance and enrichment

gc enrichment 14.07 p-value 0.00 ROC_AUC 0.572 MNCP 2.728

Positional Preference Plot

(Fullscreen)

GimmeMotifs_11 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0082 1.42e-12
rGGGGAGG	Database match

Significance and enrichment

gc enrichment 6.71 p-value 0.00 ROC_AUC 0.592 MNCP 1.789

Positional Preference Plot

(Fullscreen)

GimmeMotifs_12 (Gimme)

Motif and consensus

	GM.5.0.Runt.0002 1.00e-03
AACCGCATAA	Database match

Significance and enrichment

gc enrichment 7.91 p-value 0.00 ROC_AUC 0.559 MNCP 2.030

Positional Preference Plot

(Fullscreen)

GimmeMotifs_13 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0074 1.31e-13
AATTCTwkTC	Database match

Significance and enrichment

gc enrichment 12.90 p-value 0.00 ROC_AUC 0.589 MNCP 2.287

Positional Preference Plot

(Fullscreen)

GimmeMotifs_14 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0157 6.90e-07
ArGACwGAmA	Database match

Significance and enrichment

gc enrichment 4.32 p-value 0.00 ROC_AUC 0.563 MNCP 1.562

Positional Preference Plot

(Fullscreen)

GimmeMotifs_15 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0200 5.73e-13
CCTTATCT	Database match

Significance and enrichment

gc enrichment 6.76 p-value 0.00 ROC_AUC 0.560 MNCP 1.849

Positional Preference Plot

(Fullscreen)

Result Files

• Results
• Cluster report
• Weight matrices
• Parameters
• Log

Identified Motifs

• GimmeMotifs_1
• GimmeMotifs_2
• GimmeMotifs_3
• GimmeMotifs_4
• GimmeMotifs_5
• GimmeMotifs_6
• GimmeMotifs_7
• GimmeMotifs_8
• GimmeMotifs_9
• GimmeMotifs_10
• GimmeMotifs_11
• GimmeMotifs_12
• GimmeMotifs_13
• GimmeMotifs_14
• GimmeMotifs_15

Reference

Please cite:
van Heeringen, SJ and Veenstra, GJC, Bioinformatics.