GimmeMotifs v0.18.0

GimmeMotifs_1 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0147 2.14e-01
GGGGAGGTCTmTAAAnkG	Database match

Significance and enrichment

gc enrichment 17.68 p-value 0.00 ROC_AUC 0.600 MNCP 3.132

Positional Preference Plot

(Fullscreen)

GimmeMotifs_2 (Gimme)

Motif and consensus

	GM.5.0.SMAD.0010 2.91e-02
AArACrGmCrCTCy	Database match

Significance and enrichment

gc enrichment 16.27 p-value 0.00 ROC_AUC 0.620 MNCP 3.019

Positional Preference Plot

(Fullscreen)

GimmeMotifs_3 (Gimme)

Motif and consensus

	GM.5.0.T-box.0023 4.93e-02
TATTTCAkyCCTTA	Database match

Significance and enrichment

gc enrichment 16.94 p-value 0.00 ROC_AUC 0.606 MNCP 3.074

Positional Preference Plot

(Fullscreen)

GimmeMotifs_4 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0080 1.47e-03
AGGAATGCATTCCT	Database match

Significance and enrichment

gc enrichment 15.90 p-value 0.00 ROC_AUC 0.612 MNCP 2.995

Positional Preference Plot

(Fullscreen)

GimmeMotifs_5 (Gimme)

Motif and consensus

	GM.5.0.Myb_SANT.0017 3.09e-03
nnnnGrAAAGGAATGnAATn	Database match

Significance and enrichment

gc enrichment 19.25 p-value 0.00 ROC_AUC 0.594 MNCP 3.248

Positional Preference Plot

(Fullscreen)

GimmeMotifs_6 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0195 2.43e-04
TTCCynwTCCTAGyAA	Database match

Significance and enrichment

gc enrichment 17.10 p-value 0.00 ROC_AUC 0.579 MNCP 2.994

Positional Preference Plot

(Fullscreen)

GimmeMotifs_7 (Gimme)

Motif and consensus

	GM.5.0.SMAD.0017 9.68e-02
AACyGCATAAGACAGACA	Database match

Significance and enrichment

gc enrichment 15.56 p-value 0.00 ROC_AUC 0.580 MNCP 2.846

Positional Preference Plot

(Fullscreen)

GimmeMotifs_8 (Gimme)

Motif and consensus

	GM.5.0.Rel.0021 7.10e-02
AwATTCCTwGCTrGGAAA	Database match

Significance and enrichment

gc enrichment 15.59 p-value 0.00 ROC_AUC 0.592 MNCP 2.890

Positional Preference Plot

(Fullscreen)

GimmeMotifs_9 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0074 2.27e-01
GGACTrAAATwyrCCmkGGT	Database match

Significance and enrichment

gc enrichment 16.43 p-value 0.00 ROC_AUC 0.562 MNCP 2.897

Positional Preference Plot

(Fullscreen)

GimmeMotifs_10 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0104 2.96e-02
rGCmGGGCAGAGryrCTC	Database match

Significance and enrichment

gc enrichment 11.32 p-value 0.00 ROC_AUC 0.601 MNCP 2.381

Positional Preference Plot

(Fullscreen)

GimmeMotifs_11 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0051 8.07e-09
GnnwTTCCT	Database match

Significance and enrichment

gc enrichment 6.84 p-value 0.00 ROC_AUC 0.627 MNCP 1.807

Positional Preference Plot

(Fullscreen)

GimmeMotifs_12 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0308 4.31e-08
CmyTCCCAGr	Database match

Significance and enrichment

gc enrichment 12.85 p-value 0.00 ROC_AUC 0.574 MNCP 2.540

Positional Preference Plot

(Fullscreen)

GimmeMotifs_13 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0030 7.41e-12
CGGTCG	Database match

Significance and enrichment

gc enrichment 3.63 p-value 0.00 ROC_AUC 0.609 MNCP 1.615

Positional Preference Plot

(Fullscreen)

GimmeMotifs_14 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0018 3.71e-10
AAwGCA	Database match

Significance and enrichment

gc enrichment 1.14 p-value 0.15 ROC_AUC 0.608 MNCP 1.437

Positional Preference Plot

(Fullscreen)

GimmeMotifs_15 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0167 2.22e-04
CCTnnyCTCC	Database match

Significance and enrichment

gc enrichment 10.16 p-value 0.00 ROC_AUC 0.569 MNCP 2.225

Positional Preference Plot

(Fullscreen)

GimmeMotifs_16 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0074 7.35e-04
AGAyACkCCCwG	Database match

Significance and enrichment

gc enrichment 13.92 p-value 0.00 ROC_AUC 0.558 MNCP 2.562

Positional Preference Plot

(Fullscreen)

GimmeMotifs_17 (Gimme)

Motif and consensus

	GM.5.0.TEA.0007 4.74e-06
ATTyCATy	Database match

Significance and enrichment

gc enrichment 1.25 p-value 0.03 ROC_AUC 0.587 MNCP 1.472

Positional Preference Plot

(Fullscreen)

GimmeMotifs_18 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0242 0.00e+00
GAATGGAATGGAAT	Database match

Significance and enrichment

gc enrichment 2.80 p-value 0.00 ROC_AUC 0.557 MNCP 1.419

Positional Preference Plot

(Fullscreen)

GimmeMotifs_19 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0119 6.86e-08
AAAAGAAT	Database match

Significance and enrichment

gc enrichment 6.39 p-value 0.00 ROC_AUC 0.571 MNCP 1.585

Positional Preference Plot

(Fullscreen)

GimmeMotifs_20 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0074 2.05e-07
TAAsCskr	Database match

Significance and enrichment

gc enrichment 7.12 p-value 0.00 ROC_AUC 0.567 MNCP 1.688

Positional Preference Plot

(Fullscreen)

GimmeMotifs_21 (Gimme)

Motif and consensus

	GM.5.0.SAND.0006 7.88e-15
TATTAA	Database match

Significance and enrichment

gc enrichment 1.72 p-value 0.00 ROC_AUC 0.565 MNCP 1.395

Positional Preference Plot

(Fullscreen)

GimmeMotifs_22 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0200 7.18e-11
CCTTATCT	Database match

Significance and enrichment

gc enrichment 11.11 p-value 0.00 ROC_AUC 0.562 MNCP 2.066

Positional Preference Plot

(Fullscreen)

GimmeMotifs_23 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0195 0.00e+00
AAATTy	Database match

Significance and enrichment

gc enrichment 1.31 p-value 0.00 ROC_AUC 0.556 MNCP 1.351

Positional Preference Plot

(Fullscreen)

Result Files

• Results
• Cluster report
• Weight matrices
• Parameters
• Log

Identified Motifs

• GimmeMotifs_1
• GimmeMotifs_2
• GimmeMotifs_3
• GimmeMotifs_4
• GimmeMotifs_5
• GimmeMotifs_6
• GimmeMotifs_7
• GimmeMotifs_8
• GimmeMotifs_9
• GimmeMotifs_10
• GimmeMotifs_11
• GimmeMotifs_12
• GimmeMotifs_13
• GimmeMotifs_14
• GimmeMotifs_15
• GimmeMotifs_16
• GimmeMotifs_17
• GimmeMotifs_18
• GimmeMotifs_19
• GimmeMotifs_20
• GimmeMotifs_21
• GimmeMotifs_22
• GimmeMotifs_23

Reference

Please cite:
van Heeringen, SJ and Veenstra, GJC, Bioinformatics.