GimmeMotifs v0.18.0

GimmeMotifs_1 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0147 8.30e-02
GsCmkTTTAkAGrCCTCC	Database match

Significance and enrichment

gc enrichment 17.85 p-value 0.00 ROC_AUC 0.606 MNCP 3.120

Positional Preference Plot

(Fullscreen)

GimmeMotifs_2 (Gimme)

Motif and consensus

	GM.5.0.STAT.0011 1.84e-01
kmnGGGmwGArAyrmkCCCy	Database match

Significance and enrichment

gc enrichment 20.45 p-value 0.00 ROC_AUC 0.617 MNCP 3.396

Positional Preference Plot

(Fullscreen)

GimmeMotifs_3 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0313 2.49e-01
ArGAsAGmCrCTCCCm	Database match

Significance and enrichment

gc enrichment 18.75 p-value 0.00 ROC_AUC 0.619 MNCP 3.377

Positional Preference Plot

(Fullscreen)

GimmeMotifs_4 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0080 9.07e-04
AGGAATGCATTCCT	Database match

Significance and enrichment

gc enrichment 16.10 p-value 0.00 ROC_AUC 0.613 MNCP 3.020

Positional Preference Plot

(Fullscreen)

GimmeMotifs_5 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0195 2.30e-04
TTCCynATCCTArTAA	Database match

Significance and enrichment

gc enrichment 17.06 p-value 0.00 ROC_AUC 0.576 MNCP 3.000

Positional Preference Plot

(Fullscreen)

GimmeMotifs_6 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0242 4.57e-05
nGGAATGCATTC	Database match

Significance and enrichment

gc enrichment 16.04 p-value 0.00 ROC_AUC 0.606 MNCP 2.958

Positional Preference Plot

(Fullscreen)

GimmeMotifs_7 (Gimme)

Motif and consensus

	GM.5.0.MADS_box.0022 2.83e-01
TkAwwTmAGCCCTkrTCT	Database match

Significance and enrichment

gc enrichment 17.23 p-value 0.00 ROC_AUC 0.570 MNCP 2.975

Positional Preference Plot

(Fullscreen)

GimmeMotifs_8 (Gimme)

Motif and consensus

	GM.5.0.MADS_box.0008 7.44e-02
AAATGGCCrCTyTGGG	Database match

Significance and enrichment

gc enrichment 16.22 p-value 0.00 ROC_AUC 0.585 MNCP 2.908

Positional Preference Plot

(Fullscreen)

GimmeMotifs_9 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0228 4.74e-01
AAATAyGCCCTGGTCT	Database match

Significance and enrichment

gc enrichment 17.41 p-value 0.00 ROC_AUC 0.566 MNCP 2.992

Positional Preference Plot

(Fullscreen)

GimmeMotifs_10 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0195 2.92e-02
AwATTCCTnGCTrrGAAAAk	Database match

Significance and enrichment

gc enrichment 16.47 p-value 0.00 ROC_AUC 0.583 MNCP 2.976

Positional Preference Plot

(Fullscreen)

GimmeMotifs_11 (Gimme)

Motif and consensus

	GM.5.0.SMAD.0017 2.03e-06
ATAAGACAGACA	Database match

Significance and enrichment

gc enrichment 14.63 p-value 0.00 ROC_AUC 0.581 MNCP 2.740

Positional Preference Plot

(Fullscreen)

GimmeMotifs_12 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0242 8.14e-03
TGGGAAAGGAATGCAT	Database match

Significance and enrichment

gc enrichment 13.50 p-value 0.00 ROC_AUC 0.577 MNCP 2.662

Positional Preference Plot

(Fullscreen)

GimmeMotifs_13 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0070 3.10e-03
yCCTArTAAGCCTG	Database match

Significance and enrichment

gc enrichment 16.14 p-value 0.00 ROC_AUC 0.554 MNCP 2.865

Positional Preference Plot

(Fullscreen)

GimmeMotifs_14 (Gimme)

Motif and consensus

	GM.5.0.TEA.0007 0.00e+00
GGAATG	Database match

Significance and enrichment

gc enrichment 1.40 p-value 0.00 ROC_AUC 0.636 MNCP 1.569

Positional Preference Plot

(Fullscreen)

GimmeMotifs_15 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0104 2.52e-02
CCGGGCAGAGrCGCTC	Database match

Significance and enrichment

gc enrichment 6.92 p-value 0.00 ROC_AUC 0.581 MNCP 1.851

Positional Preference Plot

(Fullscreen)

GimmeMotifs_16 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0073 3.42e-05
GCTGGGArrrGr	Database match

Significance and enrichment

gc enrichment 3.35 p-value 0.00 ROC_AUC 0.618 MNCP 1.858

Positional Preference Plot

(Fullscreen)

GimmeMotifs_17 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0082 5.48e-12
CCTCCCCy	Database match

Significance and enrichment

gc enrichment 7.80 p-value 0.00 ROC_AUC 0.614 MNCP 1.917

Positional Preference Plot

(Fullscreen)

GimmeMotifs_18 (Gimme)

Motif and consensus

	GM.5.0.Ets.0022 1.07e-14
TTCCTTGC	Database match

Significance and enrichment

gc enrichment 10.49 p-value 0.00 ROC_AUC 0.609 MNCP 1.888

Positional Preference Plot

(Fullscreen)

GimmeMotifs_19 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0137 4.13e-13
CCTAryAA	Database match

Significance and enrichment

gc enrichment 13.91 p-value 0.00 ROC_AUC 0.601 MNCP 2.256

Positional Preference Plot

(Fullscreen)

GimmeMotifs_20 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0195 3.33e-16
AGGCTGGAATTTCC	Database match

Significance and enrichment

gc enrichment 13.41 p-value 0.00 ROC_AUC 0.562 MNCP 2.567

Positional Preference Plot

(Fullscreen)

GimmeMotifs_21 (Gimme)

Motif and consensus

	GM.5.0.Nuclear_receptor.0079 1.62e-05
AkTCyTTwTC	Database match

Significance and enrichment

gc enrichment 13.61 p-value 0.00 ROC_AUC 0.592 MNCP 2.391

Positional Preference Plot

(Fullscreen)

GimmeMotifs_22 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0075 1.23e-01
mTCCTCAyAwsCCAGA	Database match

Significance and enrichment

gc enrichment 13.41 p-value 0.00 ROC_AUC 0.567 MNCP 2.405

Positional Preference Plot

(Fullscreen)

GimmeMotifs_23 (Gimme)

Motif and consensus

	GM.5.0.Forkhead.0044 1.58e-04
TATnAATATTnATw	Database match

Significance and enrichment

gc enrichment 9.52 p-value 0.00 ROC_AUC 0.562 MNCP 2.044

Positional Preference Plot

(Fullscreen)

GimmeMotifs_24 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0021 7.01e-05
wwGCAw	Database match

Significance and enrichment

gc enrichment 1.11 p-value 0.20 ROC_AUC 0.585 MNCP 1.272

Positional Preference Plot

(Fullscreen)

GimmeMotifs_25 (Gimme)

Motif and consensus

	GM.5.0.Paired_box.0021 2.20e-11
CnCTCCCAGA	Database match

Significance and enrichment

gc enrichment 11.93 p-value 0.00 ROC_AUC 0.572 MNCP 2.472

Positional Preference Plot

(Fullscreen)

GimmeMotifs_26 (Gimme)

Motif and consensus

	GM.5.0.MADS_box.0009 1.73e-05
sCwTATyy	Database match

Significance and enrichment

gc enrichment 0.90 p-value 0.82 ROC_AUC 0.564 MNCP 1.363

Positional Preference Plot

(Fullscreen)

Result Files

• Results
• Cluster report
• Weight matrices
• Parameters
• Log

Identified Motifs

• GimmeMotifs_1
• GimmeMotifs_2
• GimmeMotifs_3
• GimmeMotifs_4
• GimmeMotifs_5
• GimmeMotifs_6
• GimmeMotifs_7
• GimmeMotifs_8
• GimmeMotifs_9
• GimmeMotifs_10
• GimmeMotifs_11
• GimmeMotifs_12
• GimmeMotifs_13
• GimmeMotifs_14
• GimmeMotifs_15
• GimmeMotifs_16
• GimmeMotifs_17
• GimmeMotifs_18
• GimmeMotifs_19
• GimmeMotifs_20
• GimmeMotifs_21
• GimmeMotifs_22
• GimmeMotifs_23
• GimmeMotifs_24
• GimmeMotifs_25
• GimmeMotifs_26

Reference

Please cite:
van Heeringen, SJ and Veenstra, GJC, Bioinformatics.