GimmeMotifs v0.18.0

GimmeMotifs_1 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0195 1.51e-02
TAATyTCTTAATCCTGTCAT	Database match

Significance and enrichment

gc enrichment 17.17 p-value 0.00 ROC_AUC 0.604 MNCP 3.091

Positional Preference Plot

(Fullscreen)

GimmeMotifs_2 (Gimme)

Motif and consensus

	GM.5.0.Forkhead.0061 2.47e-01
ArGArAAATATsGCTCwATT	Database match

Significance and enrichment

gc enrichment 16.43 p-value 0.00 ROC_AUC 0.604 MNCP 3.038

Positional Preference Plot

(Fullscreen)

GimmeMotifs_3 (Gimme)

Motif and consensus

	GM.5.0.bZIP.0032 3.71e-03
ATGAAATCTTCACATTTATG	Database match

Significance and enrichment

gc enrichment 15.94 p-value 0.00 ROC_AUC 0.618 MNCP 3.037

Positional Preference Plot

(Fullscreen)

GimmeMotifs_4 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0096 9.48e-02
nATTTCATATTkTTCAAA	Database match

Significance and enrichment

gc enrichment 16.23 p-value 0.00 ROC_AUC 0.617 MNCP 3.087

Positional Preference Plot

(Fullscreen)

GimmeMotifs_5 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0085 6.10e-01
ATrAwAyyTTyAyAATTTmT	Database match

Significance and enrichment

gc enrichment 16.16 p-value 0.00 ROC_AUC 0.616 MNCP 2.977

Positional Preference Plot

(Fullscreen)

GimmeMotifs_6 (Gimme)

Motif and consensus

	GM.5.0.MADS_box.0019 4.21e-01
TGwTwrAwswmyATGAAATC	Database match

Significance and enrichment

gc enrichment 16.16 p-value 0.00 ROC_AUC 0.602 MNCP 2.952

Positional Preference Plot

(Fullscreen)

GimmeMotifs_7 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0242 9.86e-02
TGmATTCTTTTCCyAG	Database match

Significance and enrichment

gc enrichment 15.92 p-value 0.00 ROC_AUC 0.604 MNCP 2.943

Positional Preference Plot

(Fullscreen)

GimmeMotifs_8 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0090 7.90e-03
TCACAATTTATGTT	Database match

Significance and enrichment

gc enrichment 14.20 p-value 0.00 ROC_AUC 0.602 MNCP 2.855

Positional Preference Plot

(Fullscreen)

GimmeMotifs_9 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0134 4.95e-01
TGyACAAATTGTyTkkAnAA	Database match

Significance and enrichment

gc enrichment 15.74 p-value 0.00 ROC_AUC 0.601 MNCP 2.936

Positional Preference Plot

(Fullscreen)

GimmeMotifs_10 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0003 1.13e-03
AGGCGCTCC	Database match

Significance and enrichment

gc enrichment 4.29 p-value 0.00 ROC_AUC 0.631 MNCP 1.700

Positional Preference Plot

(Fullscreen)

GimmeMotifs_11 (Gimme)

Motif and consensus

	GM.5.0.Ets.0014 2.57e-01
GGAAGTGAGGAGCGCC	Database match

Significance and enrichment

gc enrichment 11.54 p-value 0.00 ROC_AUC 0.604 MNCP 2.275

Positional Preference Plot

(Fullscreen)

GimmeMotifs_12 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0124 2.13e-02
AsTGATAArTGTCCAT	Database match

Significance and enrichment

gc enrichment 15.98 p-value 0.00 ROC_AUC 0.591 MNCP 2.947

Positional Preference Plot

(Fullscreen)

GimmeMotifs_13 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0242 9.74e-12
AATGGAATnGAATGGAAT	Database match

Significance and enrichment

gc enrichment 2.64 p-value 0.00 ROC_AUC 0.604 MNCP 1.643

Positional Preference Plot

(Fullscreen)

GimmeMotifs_14 (Gimme)

Motif and consensus

	GM.5.0.MADS_box.0018 3.49e-02
ArAGATCACATGCTTC	Database match

Significance and enrichment

gc enrichment 16.12 p-value 0.00 ROC_AUC 0.585 MNCP 2.963

Positional Preference Plot

(Fullscreen)

GimmeMotifs_15 (Gimme)

Motif and consensus

	GM.5.0.GATA.0030 5.44e-02
TTrTCTTsATAArC	Database match

Significance and enrichment

gc enrichment 14.78 p-value 0.00 ROC_AUC 0.586 MNCP 2.807

Positional Preference Plot

(Fullscreen)

GimmeMotifs_16 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0071 3.21e-05
AGGGmAGrrrGGAGnn	Database match

Significance and enrichment

gc enrichment 1.20 p-value 0.06 ROC_AUC 0.593 MNCP 1.407

Positional Preference Plot

(Fullscreen)

GimmeMotifs_17 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0063 5.85e-01
AGkrAAGACArsCATAAG	Database match

Significance and enrichment

gc enrichment 16.09 p-value 0.00 ROC_AUC 0.573 MNCP 2.819

Positional Preference Plot

(Fullscreen)

GimmeMotifs_18 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0096 4.58e-06
CGGCCG	Database match

Significance and enrichment

gc enrichment 3.87 p-value 0.00 ROC_AUC 0.622 MNCP 1.612

Positional Preference Plot

(Fullscreen)

GimmeMotifs_19 (Gimme)

Motif and consensus

	GM.5.0.bZIP.0032 7.43e-13
ATTGTwCAAA	Database match

Significance and enrichment

gc enrichment 1.33 p-value 0.00 ROC_AUC 0.616 MNCP 1.577

Positional Preference Plot

(Fullscreen)

GimmeMotifs_20 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0119 1.18e-04
TkTAATyTCTTA	Database match

Significance and enrichment

gc enrichment 16.42 p-value 0.00 ROC_AUC 0.613 MNCP 2.221

Positional Preference Plot

(Fullscreen)

GimmeMotifs_21 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0273 6.80e-04
AAGwTTTyAT	Database match

Significance and enrichment

gc enrichment 2.37 p-value 0.00 ROC_AUC 0.602 MNCP 1.667

Positional Preference Plot

(Fullscreen)

GimmeMotifs_22 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0055 5.96e-03
rnGGGGCGGCCGGGCAGA	Database match

Significance and enrichment

gc enrichment 4.72 p-value 0.00 ROC_AUC 0.574 MNCP 1.497

Positional Preference Plot

(Fullscreen)

GimmeMotifs_23 (Gimme)

Motif and consensus

	GM.5.0.bHLH.0119 1.26e-01
AAArAGArnArwwTwACAGC	Database match

Significance and enrichment

gc enrichment 14.95 p-value 0.00 ROC_AUC 0.594 MNCP 2.434

Positional Preference Plot

(Fullscreen)

GimmeMotifs_24 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0018 1.17e-07
AATGCAwT	Database match

Significance and enrichment

gc enrichment 1.37 p-value 0.00 ROC_AUC 0.582 MNCP 1.390

Positional Preference Plot

(Fullscreen)

GimmeMotifs_25 (Gimme)

Motif and consensus

	GM.5.0.Myb_SANT.0017 2.25e-04
ATGAAATC	Database match

Significance and enrichment

gc enrichment 1.08 p-value 0.26 ROC_AUC 0.579 MNCP 1.689

Positional Preference Plot

(Fullscreen)

GimmeMotifs_26 (Gimme)

Motif and consensus

	GM.5.0.bZIP.0034 6.14e-08
nACGnA	Database match

Significance and enrichment

gc enrichment 1.56 p-value 0.00 ROC_AUC 0.579 MNCP 1.256

Positional Preference Plot

(Fullscreen)

GimmeMotifs_27 (Gimme)

Motif and consensus

	GM.5.0.STAT.0015 2.76e-07
yTTGTTCyCT	Database match

Significance and enrichment

gc enrichment 1.43 p-value 0.00 ROC_AUC 0.563 MNCP 1.567

Positional Preference Plot

(Fullscreen)

Result Files

• Results
• Cluster report
• Weight matrices
• Parameters
• Log

Identified Motifs

• GimmeMotifs_1
• GimmeMotifs_2
• GimmeMotifs_3
• GimmeMotifs_4
• GimmeMotifs_5
• GimmeMotifs_6
• GimmeMotifs_7
• GimmeMotifs_8
• GimmeMotifs_9
• GimmeMotifs_10
• GimmeMotifs_11
• GimmeMotifs_12
• GimmeMotifs_13
• GimmeMotifs_14
• GimmeMotifs_15
• GimmeMotifs_16
• GimmeMotifs_17
• GimmeMotifs_18
• GimmeMotifs_19
• GimmeMotifs_20
• GimmeMotifs_21
• GimmeMotifs_22
• GimmeMotifs_23
• GimmeMotifs_24
• GimmeMotifs_25
• GimmeMotifs_26
• GimmeMotifs_27

Reference

Please cite:
van Heeringen, SJ and Veenstra, GJC, Bioinformatics.