GimmeMotifs v0.18.0

GimmeMotifs_1 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0242 1.55e-15
AATGGAATCrAATGGAATyA	Database match

Significance and enrichment

gc enrichment 6.56 p-value 0.00 ROC_AUC 0.573 MNCP 1.861

Positional Preference Plot

(Fullscreen)

GimmeMotifs_2 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0242 2.22e-16
AATGGAATsGAA	Database match

Significance and enrichment

gc enrichment 6.26 p-value 0.00 ROC_AUC 0.572 MNCP 1.752

Positional Preference Plot

(Fullscreen)

GimmeMotifs_3 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0173 3.47e-06
nkCGnw	Database match

Significance and enrichment

gc enrichment 3.80 p-value 0.00 ROC_AUC 0.668 MNCP 1.678

Positional Preference Plot

(Fullscreen)

GimmeMotifs_4 (Gimme)

Motif and consensus

	GM.5.0.E2F.0010 3.21e-12
TTCGCG	Database match

Significance and enrichment

gc enrichment 4.63 p-value 0.00 ROC_AUC 0.710 MNCP 2.219

Positional Preference Plot

(Fullscreen)

GimmeMotifs_5 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0037 1.10e-07
AwnGCG	Database match

Significance and enrichment

gc enrichment 3.06 p-value 0.00 ROC_AUC 0.695 MNCP 1.838

Positional Preference Plot

(Fullscreen)

GimmeMotifs_6 (Gimme)

Motif and consensus

	GM.5.0.Forkhead.0047 1.60e-04
nCGCmG	Database match

Significance and enrichment

gc enrichment 4.11 p-value 0.00 ROC_AUC 0.693 MNCP 1.952

Positional Preference Plot

(Fullscreen)

GimmeMotifs_7 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0242 2.69e-10
ATCGAATG	Database match

Significance and enrichment

gc enrichment 3.43 p-value 0.00 ROC_AUC 0.585 MNCP 1.585

Positional Preference Plot

(Fullscreen)

GimmeMotifs_8 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0242 0.00e+00
AATGGA	Database match

Significance and enrichment

gc enrichment 1.05 p-value 0.26 ROC_AUC 0.559 MNCP 1.213

Positional Preference Plot

(Fullscreen)

GimmeMotifs_9 (Gimme)

Motif and consensus

	GM.5.0.Mixed.0026 6.56e-05
TyyynyTyCw	Database match

Significance and enrichment

gc enrichment 1.40 p-value 0.00 ROC_AUC 0.550 MNCP 1.151

Positional Preference Plot

(Fullscreen)

Result Files

• Results
• Cluster report
• Weight matrices
• Parameters
• Log

Identified Motifs

• GimmeMotifs_1
• GimmeMotifs_2
• GimmeMotifs_3
• GimmeMotifs_4
• GimmeMotifs_5
• GimmeMotifs_6
• GimmeMotifs_7
• GimmeMotifs_8
• GimmeMotifs_9

Reference

Please cite:
van Heeringen, SJ and Veenstra, GJC, Bioinformatics.