GimmeMotifs v0.18.0

GimmeMotifs_1 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0173 7.34e-05
nnyssnnkCGnw	Database match

Significance and enrichment

gc enrichment 5.05 p-value 0.00 ROC_AUC 0.702 MNCP 2.185

Positional Preference Plot

(Fullscreen)

GimmeMotifs_2 (Gimme)

Motif and consensus

	GM.5.0.Myb_SANT.0017 6.07e-05
nTTsCAnTCsrw	Database match

Significance and enrichment

gc enrichment 3.68 p-value 0.00 ROC_AUC 0.581 MNCP 1.523

Positional Preference Plot

(Fullscreen)

GimmeMotifs_3 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0207 2.30e-03
CGCGGCGCGC	Database match

Significance and enrichment

gc enrichment 4.85 p-value 0.00 ROC_AUC 0.678 MNCP 2.003

Positional Preference Plot

(Fullscreen)

GimmeMotifs_4 (Gimme)

Motif and consensus

	GM.5.0.SMAD.0012 7.41e-03
nssssnsCGsnGssnsCG	Database match

Significance and enrichment

gc enrichment 3.31 p-value 0.00 ROC_AUC 0.661 MNCP 1.748

Positional Preference Plot

(Fullscreen)

GimmeMotifs_5 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0189 3.57e-05
TGATwCCwTynnAwTmyATT	Database match

Significance and enrichment

gc enrichment 3.44 p-value 0.00 ROC_AUC 0.551 MNCP 1.418

Positional Preference Plot

(Fullscreen)

GimmeMotifs_6 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0064 2.12e-05
TnCGCGn	Database match

Significance and enrichment

gc enrichment 5.14 p-value 0.00 ROC_AUC 0.734 MNCP 2.340

Positional Preference Plot

(Fullscreen)

GimmeMotifs_7 (Gimme)

Motif and consensus

	GM.5.0.Unknown.0068 2.20e-05
nnCGCGnn	Database match

Significance and enrichment

gc enrichment 3.26 p-value 0.00 ROC_AUC 0.733 MNCP 2.250

Positional Preference Plot

(Fullscreen)

GimmeMotifs_8 (Gimme)

Motif and consensus

	GM.5.0.SMAD.0012 7.35e-04
CCGsnsCG	Database match

Significance and enrichment

gc enrichment 4.13 p-value 0.00 ROC_AUC 0.711 MNCP 2.041

Positional Preference Plot

(Fullscreen)

GimmeMotifs_9 (Gimme)

Motif and consensus

	GM.5.0.SMAD.0012 2.87e-08
CGnCG	Database match

Significance and enrichment

gc enrichment 4.51 p-value 0.00 ROC_AUC 0.696 MNCP 2.054

Positional Preference Plot

(Fullscreen)

GimmeMotifs_10 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0285 5.68e-02
AATnnmnTCAAnTnmAwT	Database match

Significance and enrichment

gc enrichment 3.47 p-value 0.00 ROC_AUC 0.551 MNCP 1.292

Positional Preference Plot

(Fullscreen)

GimmeMotifs_11 (Gimme)

Motif and consensus

	GM.5.0.Nuclear_receptor.0069 1.42e-03
TTCGGCGC	Database match

Significance and enrichment

gc enrichment 4.02 p-value 0.00 ROC_AUC 0.680 MNCP 1.872

Positional Preference Plot

(Fullscreen)

GimmeMotifs_12 (Gimme)

Motif and consensus

	GM.5.0.Nuclear_receptor.0069 3.87e-07
CGCTCG	Database match

Significance and enrichment

gc enrichment 4.05 p-value 0.00 ROC_AUC 0.648 MNCP 1.703

Positional Preference Plot

(Fullscreen)

GimmeMotifs_13 (Gimme)

Motif and consensus

	GM.5.0.ARID_BRIGHT.0005 3.60e-05
TTTAATwAAA	Database match

Significance and enrichment

gc enrichment 1.79 p-value 0.00 ROC_AUC 0.573 MNCP 1.252

Positional Preference Plot

(Fullscreen)

GimmeMotifs_14 (Gimme)

Motif and consensus

	GM.5.0.C2H2_ZF.0195 0.00e+00
AGGAAA	Database match

Significance and enrichment

gc enrichment 1.55 p-value 0.00 ROC_AUC 0.551 MNCP 1.173

Positional Preference Plot

(Fullscreen)

Result Files

• Results
• Cluster report
• Weight matrices
• Parameters
• Log

Identified Motifs

• GimmeMotifs_1
• GimmeMotifs_2
• GimmeMotifs_3
• GimmeMotifs_4
• GimmeMotifs_5
• GimmeMotifs_6
• GimmeMotifs_7
• GimmeMotifs_8
• GimmeMotifs_9
• GimmeMotifs_10
• GimmeMotifs_11
• GimmeMotifs_12
• GimmeMotifs_13
• GimmeMotifs_14

Reference

Please cite:
van Heeringen, SJ and Veenstra, GJC, Bioinformatics.