Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group6_versus_Group8.Mast_Pheno.cls #Group6_versus_Group8_repos
Phenotype	Mast_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	4
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.21949127
Normalized Enrichment Score (NES)	0.91949
Nominal p-value	0.64444447
FDR q-value	0.8945832
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Lamc1	368	0.623	0.0102	Yes
2	Rhob	564	0.567	0.0308	Yes
3	Tpm4	620	0.548	0.0614	Yes
4	Tpm1	750	0.502	0.0832	Yes
5	Timp3	1086	0.437	0.0842	Yes
6	Copa	1110	0.436	0.1103	Yes
7	Notch2	1122	0.435	0.1373	Yes
8	Vegfa	1309	0.410	0.1485	Yes
9	Thbs1	1497	0.383	0.1580	Yes
10	Ecm1	1555	0.374	0.1773	Yes
11	Fap	2280	0.288	0.1373	Yes
12	Vegfc	2385	0.279	0.1467	Yes
13	Cald1	2689	0.259	0.1388	Yes
14	Tgm2	2700	0.259	0.1546	Yes
15	Sfrp4	2789	0.253	0.1637	Yes
16	Bmp1	2885	0.247	0.1719	Yes
17	Wipf1	2899	0.246	0.1866	Yes
18	Sgcb	3004	0.236	0.1933	Yes
19	Ntm	3120	0.228	0.1986	Yes
20	Plaur	3190	0.224	0.2074	Yes
21	Plod1	3375	0.207	0.2058	Yes
22	Pdgfrb	3390	0.206	0.2178	Yes
23	Itga2	3576	0.189	0.2150	Yes
24	Calu	3872	0.168	0.2019	Yes
25	Ppib	3874	0.168	0.2126	Yes
26	P3h1	3919	0.164	0.2195	Yes
27	Itgav	4150	0.145	0.2102	No
28	Jun	4385	0.126	0.1994	No
29	Glipr1	4570	0.111	0.1916	No
30	Plod3	4701	0.101	0.1876	No
31	Gpc1	5458	0.045	0.1294	No
32	Tnfaip3	5520	0.040	0.1270	No
33	Basp1	6053	0.004	0.0843	No
34	Cd44	6085	0.002	0.0819	No
35	Vcan	6119	0.000	0.0792	No
36	Serpine2	6133	0.000	0.0782	No
37	Ecm2	6177	0.000	0.0747	No
38	Gja1	6197	0.000	0.0731	No
39	Flna	6480	-0.008	0.0509	No
40	Emp3	6501	-0.009	0.0498	No
41	Sat1	6569	-0.014	0.0453	No
42	Itgb1	6709	-0.023	0.0356	No
43	Tgfb1	6845	-0.030	0.0266	No
44	Itgb3	6870	-0.031	0.0267	No
45	Qsox1	6871	-0.031	0.0287	No
46	Colgalt1	6911	-0.034	0.0277	No
47	Itga5	7245	-0.056	0.0044	No
48	Col5a1	7692	-0.083	-0.0264	No
49	Capg	7814	-0.091	-0.0303	No
50	Plod2	7948	-0.101	-0.0346	No
51	Il6	8050	-0.108	-0.0358	No
52	Dst	8620	-0.149	-0.0723	No
53	Gadd45a	8870	-0.167	-0.0817	No
54	Fbn1	9080	-0.184	-0.0868	No
55	Gem	9096	-0.186	-0.0761	No
56	Tgfbr3	9127	-0.189	-0.0664	No
57	Mmp14	9496	-0.217	-0.0822	No
58	Pmepa1	9799	-0.245	-0.0909	No
59	Cap2	9883	-0.249	-0.0816	No
60	Pvr	9931	-0.253	-0.0692	No
61	Mcm7	10434	-0.291	-0.0911	No
62	Lgals1	10492	-0.297	-0.0767	No
63	Mmp2	10833	-0.333	-0.0828	No
64	Fuca1	11294	-0.388	-0.0951	No
65	Il15	11736	-0.465	-0.1010	No
66	Igfbp4	11891	-0.498	-0.0815	No
67	Sntb1	12203	-0.619	-0.0669	No
68	Vim	12259	-0.662	-0.0290	No
69	Id2	12291	-0.680	0.0121	No