Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group6_versus_Group8.Mast_Pheno.cls #Group6_versus_Group8_repos
Phenotype	Mast_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	4
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	0.22658329
Normalized Enrichment Score (NES)	1.0549649
Nominal p-value	0.334
FDR q-value	0.7224442
FWER p-Value	0.987

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Psen2	46	0.977	0.0291	Yes
2	Ppp3r1	101	0.837	0.0528	Yes
3	Nefh	152	0.776	0.0747	Yes
4	Xiap	239	0.707	0.0915	Yes
5	Rhob	564	0.567	0.0842	Yes
6	Plcb2	578	0.560	0.1020	Yes
7	Gna15	615	0.549	0.1175	Yes
8	Nedd9	617	0.548	0.1358	Yes
9	Bcl2l2	647	0.536	0.1514	Yes
10	Isg20	795	0.489	0.1559	Yes
11	Psen1	912	0.462	0.1620	Yes
12	Tgfb2	1023	0.447	0.1681	Yes
13	Prf1	1047	0.443	0.1810	Yes
14	Timp3	1086	0.437	0.1926	Yes
15	Ank	1366	0.404	0.1836	Yes
16	Krt18	1513	0.381	0.1845	Yes
17	Btg2	1607	0.364	0.1892	Yes
18	Bcl2l1	1615	0.363	0.2008	Yes
19	Mgmt	1617	0.363	0.2129	Yes
20	Lmna	1769	0.343	0.2122	Yes
21	Sqstm1	1847	0.333	0.2171	Yes
22	Dnm1l	1868	0.330	0.2266	Yes
23	Rara	2120	0.303	0.2164	No
24	Fdxr	2207	0.297	0.2194	No
25	Irf1	2338	0.283	0.2183	No
26	Gch1	2592	0.267	0.2068	No
27	Gsn	2615	0.265	0.2139	No
28	Retsat	2741	0.258	0.2124	No
29	Cflar	2747	0.257	0.2206	No
30	Casp6	2880	0.247	0.2182	No
31	Ebp	3207	0.222	0.1992	No
32	Pdgfrb	3390	0.206	0.1913	No
33	Ifitm3	3597	0.187	0.1809	No
34	Tspo	3614	0.186	0.1859	No
35	Tnf	3696	0.180	0.1853	No
36	Slc20a1	3908	0.164	0.1737	No
37	Bcl10	4082	0.150	0.1647	No
38	Casp2	4121	0.147	0.1665	No
39	Anxa1	4186	0.141	0.1661	No
40	Cdkn1a	4252	0.137	0.1654	No
41	Ccnd2	4272	0.136	0.1684	No
42	Cdkn1b	4283	0.135	0.1721	No
43	Jun	4385	0.126	0.1681	No
44	Casp8	4593	0.110	0.1550	No
45	Casp9	4856	0.090	0.1368	No
46	Casp4	4989	0.079	0.1287	No
47	Cd69	5021	0.077	0.1288	No
48	Lgals3	5064	0.074	0.1279	No
49	Sptan1	5097	0.071	0.1276	No
50	Rela	5324	0.054	0.1111	No
51	Ier3	5422	0.048	0.1049	No
52	Crebbp	5454	0.045	0.1039	No
53	Btg3	5494	0.042	0.1021	No
54	Ddit3	5542	0.039	0.0996	No
55	Tnfsf10	5653	0.032	0.0917	No
56	Mcl1	5666	0.031	0.0918	No
57	Brca1	5719	0.027	0.0885	No
58	Dap	5948	0.011	0.0704	No
59	Ppp2r5b	6075	0.002	0.0602	No
60	Cd44	6085	0.002	0.0596	No
61	Pak1	6087	0.001	0.0595	No
62	Casp1	6370	-0.002	0.0367	No
63	Ctnnb1	6427	-0.005	0.0323	No
64	Dffa	6432	-0.005	0.0322	No
65	Sod1	6462	-0.007	0.0300	No
66	Sat1	6569	-0.014	0.0219	No
67	Sc5d	6613	-0.016	0.0190	No
68	F2r	6642	-0.019	0.0173	No
69	Gsr	6646	-0.019	0.0177	No
70	Txnip	6746	-0.025	0.0105	No
71	Satb1	6869	-0.031	0.0017	No
72	Bcap31	7444	-0.065	-0.0427	No
73	Sod2	7685	-0.082	-0.0594	No
74	Vdac2	7687	-0.082	-0.0568	No
75	Rhot2	7746	-0.086	-0.0586	No
76	Cyld	7748	-0.086	-0.0558	No
77	Dnajc3	7933	-0.100	-0.0673	No
78	Il6	8050	-0.108	-0.0731	No
79	Rnasel	8070	-0.109	-0.0710	No
80	Gpx4	8096	-0.111	-0.0693	No
81	Tap1	8120	-0.112	-0.0674	No
82	H1f0	8141	-0.114	-0.0652	No
83	Rock1	8245	-0.122	-0.0695	No
84	Ppt1	8497	-0.140	-0.0852	No
85	Etf1	8527	-0.142	-0.0828	No
86	Add1	8572	-0.146	-0.0814	No
87	Dnaja1	8661	-0.151	-0.0835	No
88	Gadd45a	8870	-0.167	-0.0948	No
89	Top2a	8923	-0.172	-0.0932	No
90	Casp3	9060	-0.182	-0.0981	No
91	Wee1	9109	-0.187	-0.0958	No
92	Tgfbr3	9127	-0.189	-0.0908	No
93	Madd	9215	-0.195	-0.0913	No
94	Diablo	9304	-0.202	-0.0917	No
95	App	9387	-0.207	-0.0914	No
96	Bnip3l	9499	-0.218	-0.0931	No
97	Ifngr1	9513	-0.219	-0.0868	No
98	Pea15a	9624	-0.228	-0.0881	No
99	Pdcd4	9909	-0.251	-0.1027	No
100	Bcl2l11	9921	-0.252	-0.0951	No
101	Gpx1	9945	-0.254	-0.0885	No
102	Igf2r	10076	-0.266	-0.0901	No
103	Il18	10175	-0.267	-0.0891	No
104	Bid	10420	-0.289	-0.0992	No
105	Timp2	10677	-0.317	-0.1093	No
106	Cdc25b	10755	-0.324	-0.1047	No
107	Mmp2	10833	-0.333	-0.0997	No
108	Bmf	11068	-0.357	-0.1067	No
109	Casp7	11617	-0.448	-0.1362	No
110	Erbb3	11703	-0.460	-0.1276	No
111	Smad7	11910	-0.502	-0.1275	No
112	Birc3	12071	-0.557	-0.1218	No
113	Dap3	12172	-0.600	-0.1098	No
114	Bax	12321	-0.709	-0.0980	No
115	Hmgb2	12347	-0.744	-0.0750	No
116	Ptk2	12353	-0.751	-0.0503	No
117	Cdk2	12393	-0.813	-0.0261	No
118	Hgf	12415	-0.892	0.0021	No