Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group3_versus_Group4.Mast_Pheno.cls #Group3_versus_Group4_repos
Phenotype	Mast_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_HYPOXIA
Enrichment Score (ES)	-0.2448725
Normalized Enrichment Score (NES)	-1.0290002
Nominal p-value	0.38900203
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Gaa	258	0.677	0.0009	No
2	Ampd3	290	0.661	0.0197	No
3	Pdk3	582	0.543	0.0136	No
4	Ets1	700	0.507	0.0204	No
5	Fos	708	0.504	0.0361	No
6	Ankzf1	737	0.498	0.0499	No
7	Bcl2	883	0.469	0.0532	No
8	B3galt6	1046	0.436	0.0541	No
9	Pnrc1	1177	0.416	0.0570	No
10	Anxa2	1198	0.415	0.0687	No
11	Gys1	1260	0.407	0.0769	No
12	Klf7	1274	0.405	0.0889	No
13	Ids	1382	0.388	0.0927	No
14	Scarb1	1494	0.369	0.0956	No
15	Irs2	1533	0.364	0.1043	No
16	Slc37a4	1625	0.350	0.1082	No
17	Angptl4	1745	0.336	0.1093	No
18	Klhl24	1874	0.318	0.1092	No
19	Plaur	1913	0.313	0.1162	No
20	Gpc3	1916	0.313	0.1261	No
21	Cavin1	1918	0.313	0.1362	No
22	Pim1	1940	0.311	0.1445	No
23	Pam	2133	0.288	0.1382	No
24	Mif	2191	0.282	0.1426	No
25	Bnip3l	2192	0.282	0.1517	No
26	Ier3	2412	0.265	0.1425	No
27	Foxo3	2594	0.247	0.1358	No
28	Kif5a	2635	0.243	0.1404	No
29	Ppp1r15a	3199	0.199	0.1011	No
30	Pklr	3223	0.197	0.1056	No
31	Ugp2	3338	0.188	0.1024	No
32	Gcnt2	3520	0.171	0.0932	No
33	Siah2	3668	0.159	0.0864	No
34	Cited2	3734	0.154	0.0861	No
35	Slc2a1	3945	0.138	0.0735	No
36	Btg1	4104	0.126	0.0647	No
37	Ccng2	4395	0.106	0.0446	No
38	Phkg1	4396	0.106	0.0481	No
39	Pgm1	4598	0.091	0.0347	No
40	Plin2	4716	0.082	0.0278	No
41	Tgm2	4836	0.074	0.0206	No
42	Eno3	4948	0.067	0.0137	No
43	Pfkl	5013	0.062	0.0105	No
44	Sdc2	5078	0.058	0.0072	No
45	Pgm2	5418	0.036	-0.0191	No
46	Vldlr	5470	0.033	-0.0222	No
47	Cdkn1b	5483	0.033	-0.0221	No
48	Tpd52	5614	0.024	-0.0319	No
49	Hexa	5637	0.022	-0.0330	No
50	Tpi1	5710	0.018	-0.0382	No
51	Large1	5757	0.016	-0.0414	No
52	Hk1	5810	0.013	-0.0453	No
53	Rora	5834	0.011	-0.0468	No
54	Ndst1	5912	0.005	-0.0528	No
55	Vegfa	6012	0.000	-0.0609	No
56	Bhlhe40	6020	0.000	-0.0614	No
57	Dusp1	6098	-0.001	-0.0676	No
58	Lxn	6106	-0.002	-0.0682	No
59	Ero1a	6367	-0.018	-0.0887	No
60	Hdlbp	6401	-0.020	-0.0907	No
61	Grhpr	6416	-0.021	-0.0912	No
62	Myh9	6443	-0.023	-0.0926	No
63	Fam162a	6590	-0.030	-0.1034	No
64	Pfkfb3	7017	-0.057	-0.1362	No
65	Mxi1	7830	-0.110	-0.1985	No
66	Gbe1	7917	-0.116	-0.2018	No
67	Galk1	7943	-0.117	-0.2000	No
68	Slc25a1	8013	-0.122	-0.2017	No
69	Pgk1	8171	-0.132	-0.2102	No
70	Fosl2	8210	-0.135	-0.2089	No
71	Aldoa	8369	-0.146	-0.2170	No
72	Xpnpep1	8452	-0.150	-0.2188	No
73	Sap30	8572	-0.160	-0.2233	No
74	Ddit3	8626	-0.165	-0.2223	No
75	Plac8	8655	-0.167	-0.2192	No
76	Pdk1	8659	-0.168	-0.2140	No
77	Selenbp1	8919	-0.186	-0.2290	No
78	Gpi1	9034	-0.194	-0.2320	No
79	Tpst2	9079	-0.198	-0.2292	No
80	Casp6	9273	-0.212	-0.2380	Yes
81	Ddit4	9340	-0.217	-0.2364	Yes
82	Slc2a3	9350	-0.217	-0.2301	Yes
83	Wsb1	9426	-0.223	-0.2290	Yes
84	Col5a1	9474	-0.226	-0.2255	Yes
85	Rbpj	9565	-0.230	-0.2254	Yes
86	Prkca	9575	-0.231	-0.2187	Yes
87	Hs3st1	9738	-0.245	-0.2239	Yes
88	Tiparp	9919	-0.260	-0.2302	Yes
89	Klf6	10029	-0.269	-0.2303	Yes
90	Noct	10033	-0.270	-0.2219	Yes
91	Cdkn1a	10046	-0.270	-0.2141	Yes
92	Atp7a	10238	-0.286	-0.2204	Yes
93	Gpc1	10450	-0.305	-0.2277	Yes
94	Tnfaip3	10492	-0.310	-0.2210	Yes
95	Hspa5	10524	-0.313	-0.2135	Yes
96	Jmjd6	10645	-0.328	-0.2126	Yes
97	Slc6a6	10675	-0.331	-0.2043	Yes
98	Cxcr4	10737	-0.338	-0.1984	Yes
99	Ext1	10830	-0.349	-0.1946	Yes
100	Prdx5	10869	-0.353	-0.1863	Yes
101	Kdm3a	10898	-0.355	-0.1771	Yes
102	Tes	10913	-0.357	-0.1667	Yes
103	Zfp292	10996	-0.368	-0.1615	Yes
104	Gpc4	11015	-0.371	-0.1510	Yes
105	Il6	11166	-0.392	-0.1506	Yes
106	Nedd4l	11183	-0.395	-0.1391	Yes
107	Jun	11222	-0.399	-0.1293	Yes
108	Ndrg1	11261	-0.405	-0.1194	Yes
109	Isg20	11347	-0.421	-0.1127	Yes
110	Hk2	11507	-0.442	-0.1113	Yes
111	P4ha1	11525	-0.446	-0.0984	Yes
112	Ndst2	11563	-0.453	-0.0868	Yes
113	Nr3c1	11678	-0.476	-0.0807	Yes
114	Vhl	11697	-0.480	-0.0666	Yes
115	Pfkp	11870	-0.521	-0.0638	Yes
116	Nagk	12002	-0.566	-0.0562	Yes
117	Ldha	12054	-0.585	-0.0415	Yes
118	Ilvbl	12146	-0.631	-0.0285	Yes
119	Glrx	12337	-0.792	-0.0184	Yes
120	Map3k1	12357	-0.830	0.0068	Yes