| Dataset | Mast.Mast_Pheno.cls #Group3_versus_Group4.Mast_Pheno.cls #Group3_versus_Group4_repos |
| Phenotype | Mast_Pheno.cls#Group3_versus_Group4_repos |
| Upregulated in class | 3 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_LATE |
| Enrichment Score (ES) | -0.2278529 |
| Normalized Enrichment Score (NES) | -1.038035 |
| Nominal p-value | 0.35613683 |
| FDR q-value | 1.0 |
| FWER p-Value | 1.0 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Amfr | 30 | 0.986 | 0.0317 | No |
| 2 | Hspa4l | 146 | 0.766 | 0.0490 | No |
| 3 | Nxt1 | 496 | 0.570 | 0.0404 | No |
| 4 | Kcnk5 | 517 | 0.562 | 0.0583 | No |
| 5 | Nrip1 | 595 | 0.541 | 0.0708 | No |
| 6 | Rnaseh2a | 667 | 0.515 | 0.0829 | No |
| 7 | Fos | 708 | 0.504 | 0.0971 | No |
| 8 | Slc22a5 | 740 | 0.497 | 0.1118 | No |
| 9 | Bcl2 | 883 | 0.469 | 0.1166 | No |
| 10 | Sord | 1032 | 0.440 | 0.1198 | No |
| 11 | Abhd2 | 1261 | 0.407 | 0.1154 | No |
| 12 | Slc26a2 | 1290 | 0.402 | 0.1271 | No |
| 13 | Plaat3 | 1308 | 0.399 | 0.1396 | No |
| 14 | Add3 | 1423 | 0.383 | 0.1436 | No |
| 15 | Scarb1 | 1494 | 0.369 | 0.1507 | No |
| 16 | Nab2 | 1711 | 0.340 | 0.1450 | No |
| 17 | Myb | 1734 | 0.337 | 0.1549 | No |
| 18 | Mettl3 | 1804 | 0.327 | 0.1607 | No |
| 19 | Dcxr | 1873 | 0.318 | 0.1662 | No |
| 20 | Dhcr7 | 1952 | 0.309 | 0.1706 | No |
| 21 | Xbp1 | 2167 | 0.284 | 0.1631 | No |
| 22 | Opn3 | 2560 | 0.251 | 0.1400 | No |
| 23 | Rps6ka2 | 2610 | 0.245 | 0.1445 | No |
| 24 | Impa2 | 2963 | 0.215 | 0.1234 | No |
| 25 | Cd44 | 3092 | 0.208 | 0.1203 | No |
| 26 | Pdcd4 | 3197 | 0.200 | 0.1188 | No |
| 27 | Hmgcs2 | 3351 | 0.186 | 0.1128 | No |
| 28 | Il6st | 3431 | 0.180 | 0.1126 | No |
| 29 | Tmprss3 | 3557 | 0.168 | 0.1083 | No |
| 30 | Siah2 | 3668 | 0.159 | 0.1049 | No |
| 31 | Jak2 | 3691 | 0.158 | 0.1086 | No |
| 32 | Flnb | 4026 | 0.131 | 0.0861 | No |
| 33 | Ass1 | 4344 | 0.109 | 0.0642 | No |
| 34 | Atp2b4 | 4768 | 0.080 | 0.0327 | No |
| 35 | Btg3 | 4794 | 0.078 | 0.0333 | No |
| 36 | Rab31 | 4926 | 0.068 | 0.0251 | No |
| 37 | Slc16a1 | 5016 | 0.062 | 0.0200 | No |
| 38 | Cdh1 | 5199 | 0.049 | 0.0070 | No |
| 39 | Stil | 5514 | 0.031 | -0.0174 | No |
| 40 | Car2 | 5520 | 0.030 | -0.0168 | No |
| 41 | Cacna2d2 | 5594 | 0.025 | -0.0218 | No |
| 42 | Cdc6 | 5688 | 0.019 | -0.0287 | No |
| 43 | Large1 | 5757 | 0.016 | -0.0337 | No |
| 44 | Id2 | 5813 | 0.012 | -0.0377 | No |
| 45 | S100a9 | 6037 | 0.000 | -0.0558 | No |
| 46 | Dynlt3 | 6142 | -0.003 | -0.0641 | No |
| 47 | Ncor2 | 6320 | -0.014 | -0.0779 | No |
| 48 | Cdc20 | 6337 | -0.016 | -0.0787 | No |
| 49 | Pkp3 | 6466 | -0.024 | -0.0882 | No |
| 50 | Aldh3a2 | 6660 | -0.036 | -0.1026 | No |
| 51 | Slc24a3 | 6663 | -0.036 | -0.1015 | No |
| 52 | Snx10 | 6936 | -0.052 | -0.1218 | No |
| 53 | Gale | 7164 | -0.067 | -0.1379 | No |
| 54 | Dnajc12 | 7279 | -0.073 | -0.1446 | No |
| 55 | Tjp3 | 7397 | -0.080 | -0.1513 | No |
| 56 | Dusp2 | 7436 | -0.083 | -0.1515 | No |
| 57 | Gins2 | 7612 | -0.094 | -0.1624 | No |
| 58 | Fkbp5 | 7665 | -0.098 | -0.1633 | No |
| 59 | Ptpn6 | 7706 | -0.100 | -0.1630 | No |
| 60 | Arl3 | 7881 | -0.114 | -0.1732 | No |
| 61 | Blvrb | 8260 | -0.138 | -0.1990 | No |
| 62 | Fdft1 | 8336 | -0.144 | -0.2002 | No |
| 63 | Elovl5 | 8427 | -0.149 | -0.2023 | No |
| 64 | Homer2 | 8428 | -0.149 | -0.1971 | No |
| 65 | Slc29a1 | 8537 | -0.157 | -0.2004 | No |
| 66 | Tob1 | 8553 | -0.158 | -0.1961 | No |
| 67 | Il17rb | 8554 | -0.158 | -0.1907 | No |
| 68 | Mocs2 | 8593 | -0.162 | -0.1881 | No |
| 69 | Sgk1 | 8619 | -0.164 | -0.1845 | No |
| 70 | Idh2 | 8688 | -0.170 | -0.1841 | No |
| 71 | Tspan13 | 8755 | -0.174 | -0.1834 | No |
| 72 | Xrcc3 | 8794 | -0.176 | -0.1804 | No |
| 73 | Fabp5 | 8814 | -0.178 | -0.1757 | No |
| 74 | Prkar2b | 8987 | -0.191 | -0.1831 | No |
| 75 | Kif20a | 9422 | -0.223 | -0.2105 | No |
| 76 | Igfbp4 | 9424 | -0.223 | -0.2029 | No |
| 77 | Gla | 9582 | -0.233 | -0.2075 | No |
| 78 | Bag1 | 9668 | -0.239 | -0.2061 | No |
| 79 | Cish | 9725 | -0.243 | -0.2022 | No |
| 80 | Llgl2 | 9743 | -0.245 | -0.1951 | No |
| 81 | Itpk1 | 9978 | -0.265 | -0.2049 | No |
| 82 | Chpt1 | 10220 | -0.285 | -0.2146 | Yes |
| 83 | Aff1 | 10226 | -0.286 | -0.2051 | Yes |
| 84 | Anxa9 | 10371 | -0.298 | -0.2064 | Yes |
| 85 | Fkbp4 | 10477 | -0.308 | -0.2042 | Yes |
| 86 | Top2a | 10616 | -0.324 | -0.2042 | Yes |
| 87 | Dnajc1 | 10740 | -0.338 | -0.2024 | Yes |
| 88 | Etfb | 10815 | -0.347 | -0.1964 | Yes |
| 89 | Slc7a5 | 11204 | -0.396 | -0.2141 | Yes |
| 90 | Batf | 11242 | -0.403 | -0.2032 | Yes |
| 91 | Rabep1 | 11250 | -0.404 | -0.1897 | Yes |
| 92 | Ptger3 | 11325 | -0.416 | -0.1813 | Yes |
| 93 | Isg20 | 11347 | -0.421 | -0.1684 | Yes |
| 94 | Plk4 | 11461 | -0.433 | -0.1625 | Yes |
| 95 | Ugdh | 11533 | -0.447 | -0.1528 | Yes |
| 96 | Ppif | 11628 | -0.467 | -0.1442 | Yes |
| 97 | Jak1 | 11693 | -0.480 | -0.1328 | Yes |
| 98 | Rbbp8 | 11761 | -0.492 | -0.1212 | Yes |
| 99 | Cd9 | 11780 | -0.495 | -0.1054 | Yes |
| 100 | Gfus | 12004 | -0.566 | -0.1039 | Yes |
| 101 | Pgr | 12012 | -0.570 | -0.0847 | Yes |
| 102 | Tiam1 | 12053 | -0.585 | -0.0677 | Yes |
| 103 | Abca3 | 12125 | -0.625 | -0.0518 | Yes |
| 104 | Cox6c | 12196 | -0.660 | -0.0346 | Yes |
| 105 | Unc13b | 12258 | -0.702 | -0.0152 | Yes |
| 106 | Papss2 | 12368 | -0.863 | 0.0059 | Yes |

