Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group3_versus_Group4.Mast_Pheno.cls #Group3_versus_Group4_repos
Phenotype	Mast_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.3256381
Normalized Enrichment Score (NES)	-1.3449446
Nominal p-value	0.06652807
FDR q-value	0.891409
FWER p-Value	0.707

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Sat1	50	0.914	0.0474	No
2	Mmp2	177	0.734	0.0786	No
3	Sgcb	652	0.519	0.0695	No
4	Itga5	874	0.471	0.0782	No
5	Timp3	1817	0.325	0.0204	No
6	Plaur	1913	0.313	0.0303	No
7	Copa	2023	0.299	0.0384	No
8	Notch2	2112	0.292	0.0477	No
9	Dst	2336	0.269	0.0448	No
10	Itga2	2433	0.263	0.0519	No
11	Fbn1	2806	0.227	0.0347	No
12	Gja1	2815	0.227	0.0468	No
13	Cd44	3092	0.208	0.0362	No
14	Wipf1	3130	0.205	0.0448	No
15	Mmp14	3171	0.202	0.0529	No
16	Calu	3172	0.202	0.0643	No
17	Lamc1	3194	0.200	0.0739	No
18	Fuca1	3563	0.168	0.0536	No
19	Itgb1	3793	0.150	0.0435	No
20	Capg	3973	0.136	0.0367	No
21	Cald1	4126	0.124	0.0315	No
22	Tgfbr3	4269	0.113	0.0264	No
23	Il15	4305	0.111	0.0298	No
24	P3h1	4323	0.111	0.0346	No
25	Lgals1	4368	0.108	0.0372	No
26	Tpm4	4521	0.097	0.0303	No
27	Rhob	4673	0.085	0.0229	No
28	Tgm2	4836	0.074	0.0140	No
29	Cap2	4859	0.073	0.0163	No
30	Bmp1	5115	0.056	-0.0012	No
31	Colgalt1	5351	0.040	-0.0179	No
32	Id2	5813	0.012	-0.0545	No
33	Vcan	6010	0.000	-0.0703	No
34	Vegfa	6012	0.000	-0.0704	No
35	Serpine2	6015	0.000	-0.0705	No
36	Thbs1	6026	0.000	-0.0714	No
37	Gem	6149	-0.003	-0.0810	No
38	Pvr	6269	-0.010	-0.0901	No
39	Glipr1	6439	-0.023	-0.1024	No
40	Emp3	6627	-0.033	-0.1157	No
41	Plod1	7110	-0.064	-0.1511	No
42	Ecm2	7165	-0.067	-0.1517	No
43	Tgfb1	7224	-0.069	-0.1525	No
44	Plod2	8187	-0.133	-0.2227	No
45	Itgb3	8559	-0.160	-0.2437	No
46	Sntb1	9067	-0.197	-0.2736	No
47	Igfbp4	9424	-0.223	-0.2898	No
48	Col5a1	9474	-0.226	-0.2810	No
49	Ntm	10023	-0.269	-0.3101	Yes
50	Vim	10216	-0.284	-0.3096	Yes
51	Tpm1	10341	-0.296	-0.3030	Yes
52	Gpc1	10450	-0.305	-0.2945	Yes
53	Tnfaip3	10492	-0.310	-0.2803	Yes
54	Ecm1	10678	-0.331	-0.2766	Yes
55	Itgav	10702	-0.334	-0.2597	Yes
56	Pmepa1	10838	-0.350	-0.2509	Yes
57	Sfrp4	10964	-0.364	-0.2405	Yes
58	Flna	11028	-0.372	-0.2246	Yes
59	Plod3	11069	-0.379	-0.2065	Yes
60	Il6	11166	-0.392	-0.1922	Yes
61	Jun	11222	-0.399	-0.1741	Yes
62	Pdgfrb	11500	-0.441	-0.1717	Yes
63	Fap	11512	-0.443	-0.1477	Yes
64	Vegfc	11767	-0.494	-0.1404	Yes
65	Qsox1	11936	-0.545	-0.1233	Yes
66	Mcm7	11971	-0.556	-0.0947	Yes
67	Ppib	11974	-0.557	-0.0635	Yes
68	Gadd45a	12217	-0.676	-0.0450	Yes
69	Basp1	12421	-1.119	0.0016	Yes