Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group3_versus_Group4.Mast_Pheno.cls #Group3_versus_Group4_repos
Phenotype	Mast_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	2
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	0.26155698
Normalized Enrichment Score (NES)	1.1755458
Nominal p-value	0.14579439
FDR q-value	0.5749681
FWER p-Value	0.961

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Vdac2	19	1.090	0.0293	Yes
2	Sat1	50	0.914	0.0527	Yes
3	Mmp2	177	0.734	0.0632	Yes
4	Smad7	205	0.710	0.0811	Yes
5	Casp4	391	0.611	0.0833	Yes
6	Birc3	441	0.593	0.0961	Yes
7	Lgals3	552	0.549	0.1027	Yes
8	Igf2r	593	0.541	0.1148	Yes
9	Madd	605	0.537	0.1291	Yes
10	Ifitm3	659	0.516	0.1393	Yes
11	Ccnd2	729	0.500	0.1479	Yes
12	Wee1	779	0.490	0.1578	Yes
13	Erbb3	850	0.474	0.1655	Yes
14	Ppp2r5b	1078	0.429	0.1592	Yes
15	Ptk2	1092	0.427	0.1702	Yes
16	F2r	1138	0.421	0.1785	Yes
17	App	1149	0.419	0.1895	Yes
18	Bcl2l2	1231	0.409	0.1945	Yes
19	Rela	1316	0.398	0.1989	Yes
20	Gsn	1345	0.394	0.2078	Yes
21	Mgmt	1478	0.373	0.2076	Yes
22	Fdxr	1545	0.361	0.2125	Yes
23	Casp2	1562	0.359	0.2213	Yes
24	Dnaja1	1565	0.358	0.2313	Yes
25	Slc20a1	1794	0.328	0.2221	Yes
26	Timp3	1817	0.325	0.2295	Yes
27	Cdk2	1844	0.321	0.2364	Yes
28	Sod1	1938	0.311	0.2377	Yes
29	Add1	1992	0.303	0.2420	Yes
30	Tgfb2	2032	0.298	0.2472	Yes
31	Irf1	2114	0.291	0.2489	Yes
32	Cflar	2127	0.290	0.2561	Yes
33	Bnip3l	2192	0.282	0.2589	Yes
34	Ier3	2412	0.265	0.2486	Yes
35	Hgf	2431	0.263	0.2546	Yes
36	Timp2	2438	0.263	0.2616	Yes
37	Casp9	2553	0.251	0.2594	No
38	Cdc25b	2916	0.219	0.2362	No
39	Tnf	2977	0.214	0.2374	No
40	Cd44	3092	0.208	0.2340	No
41	Pdcd4	3197	0.200	0.2312	No
42	Bid	3467	0.175	0.2144	No
43	Dffa	3615	0.164	0.2071	No
44	Dap3	3727	0.155	0.2024	No
45	Cyld	3825	0.147	0.1987	No
46	Ifngr1	4037	0.131	0.1853	No
47	Casp3	4122	0.125	0.1820	No
48	Dnajc3	4236	0.116	0.1761	No
49	Tgfbr3	4269	0.113	0.1767	No
50	Mcl1	4369	0.108	0.1717	No
51	Sc5d	4451	0.102	0.1681	No
52	Rhob	4673	0.085	0.1525	No
53	Rock1	4754	0.080	0.1483	No
54	Btg3	4794	0.078	0.1474	No
55	Plcb2	4876	0.071	0.1428	No
56	Casp1	4910	0.069	0.1421	No
57	Nefh	4911	0.069	0.1440	No
58	Sptan1	5076	0.059	0.1324	No
59	Dnm1l	5228	0.048	0.1215	No
60	Cdkn1b	5483	0.033	0.1018	No
61	Lmna	5558	0.027	0.0965	No
62	Anxa1	5632	0.023	0.0913	No
63	Tap1	5663	0.021	0.0894	No
64	Brca1	5718	0.018	0.0855	No
65	Xiap	5744	0.016	0.0840	No
66	Etf1	5931	0.005	0.0690	No
67	Bcl2l1	5990	0.001	0.0643	No
68	Krt18	6105	-0.002	0.0551	No
69	Gna15	6146	-0.003	0.0520	No
70	Pak1	6356	-0.017	0.0355	No
71	Bmf	6440	-0.023	0.0294	No
72	Diablo	6548	-0.027	0.0215	No
73	Psen1	6623	-0.033	0.0164	No
74	Ppt1	6723	-0.040	0.0095	No
75	Psen2	7261	-0.072	-0.0320	No
76	Ctnnb1	7456	-0.083	-0.0454	No
77	Bcap31	7555	-0.090	-0.0508	No
78	Il18	7935	-0.117	-0.0783	No
79	Sqstm1	8064	-0.126	-0.0851	No
80	Gsr	8421	-0.149	-0.1098	No
81	Ddit3	8626	-0.165	-0.1217	No
82	Btg2	8796	-0.177	-0.1304	No
83	Sod2	9129	-0.201	-0.1517	No
84	Casp6	9273	-0.212	-0.1573	No
85	Retsat	9325	-0.216	-0.1553	No
86	Prf1	9480	-0.226	-0.1614	No
87	Gpx4	9587	-0.233	-0.1634	No
88	Casp8	9620	-0.236	-0.1594	No
89	Casp7	9810	-0.251	-0.1676	No
90	Ebp	9815	-0.251	-0.1608	No
91	Rnasel	9958	-0.264	-0.1649	No
92	Cdkn1a	10046	-0.270	-0.1643	No
93	Crebbp	10073	-0.272	-0.1587	No
94	Dap	10427	-0.303	-0.1788	No
95	Top2a	10616	-0.324	-0.1849	No
96	Nedd9	10719	-0.336	-0.1837	No
97	H1f0	10760	-0.341	-0.1773	No
98	Pea15a	10794	-0.344	-0.1702	No
99	Rhot2	10795	-0.344	-0.1605	No
100	Hmgb2	10810	-0.347	-0.1518	No
101	Gpx1	11139	-0.389	-0.1674	No
102	Il6	11166	-0.392	-0.1585	No
103	Jun	11222	-0.399	-0.1516	No
104	Ppp3r1	11237	-0.402	-0.1414	No
105	Bcl2l11	11247	-0.403	-0.1307	No
106	Txnip	11275	-0.407	-0.1214	No
107	Isg20	11347	-0.421	-0.1153	No
108	Pdgfrb	11500	-0.441	-0.1151	No
109	Satb1	11706	-0.482	-0.1182	No
110	Tspo	11763	-0.493	-0.1088	No
111	Bcl10	11826	-0.503	-0.0996	No
112	Gch1	11927	-0.543	-0.0924	No
113	Bax	12153	-0.633	-0.0927	No
114	Gadd45a	12217	-0.676	-0.0787	No
115	Rara	12243	-0.692	-0.0612	No
116	Tnfsf10	12367	-0.861	-0.0468	No
117	Ank	12392	-0.916	-0.0229	No
118	Cd69	12399	-0.948	0.0034	No