Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group2_versus_Group4.Mast_Pheno.cls #Group2_versus_Group4_repos
Phenotype	Mast_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_HYPOXIA
Enrichment Score (ES)	0.20105124
Normalized Enrichment Score (NES)	0.81200624
Nominal p-value	0.7871901
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Ankzf1	24	1.021	0.0290	Yes
2	Pam	183	0.727	0.0382	Yes
3	Fos	369	0.619	0.0419	Yes
4	Ets1	412	0.604	0.0568	Yes
5	Plaur	572	0.550	0.0606	Yes
6	Ccng2	623	0.535	0.0728	Yes
7	Angptl4	715	0.509	0.0808	Yes
8	Pgm2	731	0.505	0.0949	Yes
9	Ppp1r15a	735	0.502	0.1099	Yes
10	Ampd3	749	0.499	0.1240	Yes
11	Ndst2	1079	0.435	0.1105	Yes
12	Klhl24	1172	0.424	0.1159	Yes
13	Prkca	1349	0.396	0.1136	Yes
14	Ndst1	1530	0.370	0.1102	Yes
15	Bcl2	1579	0.362	0.1173	Yes
16	Nedd4l	1607	0.358	0.1259	Yes
17	Bhlhe40	1639	0.352	0.1341	Yes
18	Tnfaip3	1645	0.352	0.1443	Yes
19	Btg1	1658	0.350	0.1540	Yes
20	Hk1	1694	0.347	0.1616	Yes
21	Gys1	1750	0.337	0.1674	Yes
22	Atp7a	1859	0.322	0.1684	Yes
23	Large1	1869	0.321	0.1774	Yes
24	Ero1a	1881	0.319	0.1862	Yes
25	Ugp2	1959	0.311	0.1893	Yes
26	Gaa	2021	0.304	0.1936	Yes
27	Fosl2	2043	0.303	0.2011	Yes
28	Rora	2203	0.281	0.1967	No
29	Vegfa	2379	0.264	0.1904	No
30	Eno3	2590	0.244	0.1808	No
31	Noct	2635	0.240	0.1845	No
32	Kif5a	2823	0.224	0.1761	No
33	Gpc1	2904	0.216	0.1762	No
34	Jun	2908	0.216	0.1824	No
35	Tpi1	2909	0.215	0.1890	No
36	Col5a1	3137	0.194	0.1764	No
37	Slc2a3	3149	0.192	0.1814	No
38	Bnip3l	3239	0.184	0.1797	No
39	Gpc3	3244	0.183	0.1849	No
40	Slc37a4	3377	0.173	0.1795	No
41	Myh9	3460	0.166	0.1778	No
42	Pim1	3651	0.148	0.1669	No
43	Irs2	3858	0.132	0.1542	No
44	Cdkn1b	4198	0.107	0.1299	No
45	Cdkn1a	4579	0.077	0.1014	No
46	Pklr	4659	0.070	0.0971	No
47	Ddit4	4690	0.068	0.0967	No
48	Il6	4754	0.064	0.0936	No
49	Ext1	4814	0.061	0.0906	No
50	Nr3c1	5007	0.049	0.0765	No
51	Xpnpep1	5029	0.047	0.0762	No
52	Pgm1	5084	0.043	0.0732	No
53	Hs3st1	5260	0.032	0.0600	No
54	Sdc2	5269	0.032	0.0603	No
55	Gpc4	5393	0.025	0.0510	No
56	Map3k1	5420	0.022	0.0496	No
57	Gcnt2	5434	0.021	0.0492	No
58	Dusp1	5551	0.013	0.0402	No
59	Hspa5	5579	0.012	0.0384	No
60	Aldoa	5614	0.009	0.0359	No
61	Cavin1	5849	-0.008	0.0171	No
62	Pdk3	5988	-0.017	0.0064	No
63	Wsb1	6218	-0.034	-0.0111	No
64	Casp6	6285	-0.039	-0.0153	No
65	Foxo3	6330	-0.042	-0.0176	No
66	Pnrc1	6414	-0.048	-0.0229	No
67	Kdm3a	6479	-0.052	-0.0265	No
68	B3galt6	6496	-0.053	-0.0262	No
69	Slc6a6	6564	-0.058	-0.0299	No
70	Sap30	6639	-0.062	-0.0340	No
71	Tes	6671	-0.064	-0.0345	No
72	Hexa	6728	-0.069	-0.0370	No
73	Plin2	6784	-0.073	-0.0393	No
74	Grhpr	6855	-0.078	-0.0426	No
75	Tiparp	6884	-0.079	-0.0425	No
76	Gpi1	6910	-0.081	-0.0420	No
77	Ids	7030	-0.089	-0.0490	No
78	Siah2	7152	-0.098	-0.0559	No
79	Klf6	7168	-0.099	-0.0541	No
80	Pgk1	7214	-0.102	-0.0546	No
81	Mxi1	7379	-0.112	-0.0646	No
82	Pfkp	7839	-0.141	-0.0975	No
83	Cited2	7954	-0.148	-0.1023	No
84	Isg20	7957	-0.148	-0.0979	No
85	Ier3	8367	-0.180	-0.1257	No
86	Anxa2	8465	-0.186	-0.1279	No
87	Scarb1	8909	-0.220	-0.1572	No
88	Jmjd6	9037	-0.230	-0.1605	No
89	Slc2a1	9138	-0.239	-0.1614	No
90	Selenbp1	9242	-0.247	-0.1622	No
91	Mif	9243	-0.248	-0.1547	No
92	Hdlbp	9393	-0.258	-0.1590	No
93	Lxn	9401	-0.258	-0.1518	No
94	Vldlr	9450	-0.262	-0.1477	No
95	Phkg1	9757	-0.285	-0.1639	No
96	P4ha1	9829	-0.291	-0.1609	No
97	Fam162a	10236	-0.329	-0.1839	No
98	Tpst2	10280	-0.334	-0.1772	No
99	Gbe1	10323	-0.339	-0.1704	No
100	Prdx5	10519	-0.360	-0.1753	No
101	Galk1	10525	-0.360	-0.1648	No
102	Pfkfb3	10568	-0.366	-0.1571	No
103	Plac8	10755	-0.388	-0.1604	No
104	Pdk1	10910	-0.406	-0.1606	No
105	Slc25a1	11045	-0.425	-0.1586	No
106	Ddit3	11137	-0.437	-0.1528	No
107	Tgm2	11152	-0.438	-0.1406	No
108	Tpd52	11192	-0.443	-0.1304	No
109	Klf7	11328	-0.464	-0.1273	No
110	Ilvbl	11360	-0.468	-0.1156	No
111	Rbpj	11532	-0.497	-0.1144	No
112	Vhl	11576	-0.505	-0.1026	No
113	Pfkl	11800	-0.560	-0.1037	No
114	Cxcr4	11988	-0.617	-0.1002	No
115	Hk2	12122	-0.668	-0.0907	No
116	Ndrg1	12192	-0.705	-0.0750	No
117	Zfp292	12197	-0.707	-0.0539	No
118	Ldha	12252	-0.745	-0.0357	No
119	Glrx	12255	-0.747	-0.0132	No
120	Nagk	12385	-0.930	0.0045	No