Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group2_versus_Group4.Mast_Pheno.cls #Group2_versus_Group4_repos
Phenotype	Mast_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	0.2319001
Normalized Enrichment Score (NES)	1.0551105
Nominal p-value	0.3510204
FDR q-value	1.0
FWER p-Value	0.989

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Sat1	8	1.214	0.0378	Yes
2	Birc3	87	0.835	0.0580	Yes
3	Dnaja1	227	0.688	0.0685	Yes
4	App	366	0.620	0.0770	Yes
5	Smad7	373	0.618	0.0961	Yes
6	Ppp2r5b	380	0.614	0.1150	Yes
7	Ptk2	474	0.580	0.1259	Yes
8	Cflar	866	0.473	0.1092	Yes
9	Sptan1	883	0.469	0.1227	Yes
10	Slc20a1	913	0.463	0.1350	Yes
11	Vdac2	1054	0.438	0.1375	Yes
12	Lgals3	1081	0.435	0.1492	Yes
13	Gpx4	1098	0.434	0.1617	Yes
14	Prf1	1178	0.424	0.1687	Yes
15	Igf2r	1214	0.418	0.1791	Yes
16	Irf1	1292	0.404	0.1856	Yes
17	Tnf	1427	0.383	0.1869	Yes
18	Cd44	1522	0.371	0.1911	Yes
19	Dffa	1552	0.366	0.2003	Yes
20	Wee1	1778	0.333	0.1926	Yes
21	Madd	1822	0.326	0.1995	Yes
22	Gsn	1842	0.325	0.2082	Yes
23	Rela	1902	0.317	0.2135	Yes
24	Tgfb2	1921	0.314	0.2220	Yes
25	Btg3	2046	0.302	0.2215	Yes
26	Casp2	2195	0.282	0.2184	Yes
27	Bcl2l1	2275	0.274	0.2207	Yes
28	Sc5d	2370	0.265	0.2215	Yes
29	Bcl2l11	2400	0.263	0.2274	Yes
30	Nedd9	2695	0.235	0.2110	Yes
31	Tnfsf10	2746	0.230	0.2143	Yes
32	Bmf	2825	0.224	0.2150	Yes
33	Dap3	2886	0.218	0.2171	Yes
34	Jun	2908	0.216	0.2222	Yes
35	Xiap	2948	0.212	0.2258	Yes
36	Mmp2	2956	0.211	0.2319	Yes
37	Bnip3l	3239	0.184	0.2148	No
38	Erbb3	3376	0.173	0.2093	No
39	Rhob	3428	0.169	0.2105	No
40	Add1	3553	0.158	0.2055	No
41	Psen2	3683	0.145	0.1996	No
42	Pdcd4	4132	0.112	0.1668	No
43	Casp1	4181	0.109	0.1664	No
44	Cdkn1b	4198	0.107	0.1685	No
45	Lmna	4255	0.102	0.1671	No
46	Casp3	4269	0.101	0.1693	No
47	Pak1	4336	0.095	0.1669	No
48	Rock1	4378	0.092	0.1665	No
49	Etf1	4384	0.091	0.1690	No
50	Cdkn1a	4579	0.077	0.1557	No
51	Nefh	4598	0.075	0.1566	No
52	Bcap31	4699	0.068	0.1506	No
53	Cyld	4718	0.067	0.1513	No
54	Cd69	4734	0.065	0.1521	No
55	Il6	4754	0.064	0.1526	No
56	Mgmt	4839	0.059	0.1477	No
57	Dnajc3	4843	0.059	0.1493	No
58	Bcl2l2	5037	0.047	0.1351	No
59	Psen1	5222	0.035	0.1213	No
60	Sqstm1	5243	0.034	0.1208	No
61	Bid	5459	0.020	0.1039	No
62	Hgf	5929	-0.014	0.0663	No
63	Mcl1	5955	-0.015	0.0648	No
64	Dnm1l	6107	-0.027	0.0534	No
65	Tap1	6134	-0.028	0.0522	No
66	Cdc25b	6217	-0.034	0.0466	No
67	Casp6	6285	-0.039	0.0424	No
68	Timp3	6572	-0.058	0.0210	No
69	Ppt1	6689	-0.066	0.0137	No
70	Casp4	6723	-0.069	0.0132	No
71	Crebbp	6829	-0.076	0.0071	No
72	Ctnnb1	7057	-0.091	-0.0084	No
73	Retsat	7227	-0.103	-0.0189	No
74	Ifngr1	7497	-0.119	-0.0369	No
75	Dap	7538	-0.121	-0.0363	No
76	Sod1	7557	-0.122	-0.0339	No
77	Diablo	7758	-0.136	-0.0458	No
78	Pdgfrb	7860	-0.143	-0.0495	No
79	Isg20	7957	-0.148	-0.0526	No
80	Krt18	7969	-0.149	-0.0488	No
81	Anxa1	8138	-0.163	-0.0572	No
82	Timp2	8182	-0.166	-0.0555	No
83	Gna15	8320	-0.177	-0.0610	No
84	Ier3	8367	-0.180	-0.0590	No
85	Cdk2	8491	-0.188	-0.0630	No
86	F2r	8656	-0.200	-0.0700	No
87	Rara	8669	-0.201	-0.0646	No
88	Ppp3r1	8840	-0.214	-0.0716	No
89	Ifitm3	8875	-0.218	-0.0675	No
90	Satb1	9121	-0.238	-0.0798	No
91	Rhot2	9388	-0.257	-0.0932	No
92	Txnip	9389	-0.257	-0.0851	No
93	Casp7	9414	-0.259	-0.0788	No
94	Il18	9416	-0.259	-0.0707	No
95	Plcb2	9504	-0.266	-0.0693	No
96	Ccnd2	9517	-0.267	-0.0618	No
97	Casp9	9690	-0.279	-0.0669	No
98	Rnasel	9804	-0.289	-0.0669	No
99	Fdxr	9818	-0.290	-0.0588	No
100	Btg2	9904	-0.298	-0.0563	No
101	Brca1	10047	-0.311	-0.0579	No
102	Tspo	10063	-0.312	-0.0493	No
103	Casp8	10066	-0.312	-0.0395	No
104	Gsr	10230	-0.329	-0.0423	No
105	Gch1	10255	-0.331	-0.0338	No
106	Pea15a	10530	-0.361	-0.0446	No
107	H1f0	10734	-0.385	-0.0489	No
108	Hmgb2	10759	-0.388	-0.0385	No
109	Ank	10924	-0.407	-0.0389	No
110	Top2a	11022	-0.421	-0.0334	No
111	Ddit3	11137	-0.437	-0.0289	No
112	Sod2	11375	-0.471	-0.0332	No
113	Bax	11415	-0.477	-0.0212	No
114	Tgfbr3	11970	-0.610	-0.0468	No
115	Bcl10	12067	-0.641	-0.0343	No
116	Gadd45a	12109	-0.660	-0.0167	No
117	Ebp	12121	-0.667	0.0035	No
118	Gpx1	12194	-0.706	0.0200	No