Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group2_versus_Group3.Mast_Pheno.cls #Group2_versus_Group3_repos
Phenotype	Mast_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	1
GeneSet	HALLMARK_HYPOXIA
Enrichment Score (ES)	0.25371984
Normalized Enrichment Score (NES)	1.0268612
Nominal p-value	0.40567952
FDR q-value	0.7812424
FWER p-Value	0.998

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Ndst2	27	0.975	0.0232	Yes
2	Map3k1	79	0.824	0.0406	Yes
3	Atp7a	172	0.724	0.0520	Yes
4	Tnfaip3	184	0.717	0.0699	Yes
5	Nedd4l	192	0.713	0.0879	Yes
6	Prkca	323	0.643	0.0942	Yes
7	Il6	428	0.598	0.1013	Yes
8	Jun	441	0.595	0.1159	Yes
9	Ccng2	512	0.573	0.1252	Yes
10	Noct	612	0.538	0.1312	Yes
11	Pgm2	617	0.537	0.1449	Yes
12	Nr3c1	667	0.526	0.1546	Yes
13	Ext1	799	0.494	0.1569	Yes
14	Hs3st1	800	0.494	0.1698	Yes
15	Fosl2	863	0.478	0.1772	Yes
16	Col5a1	941	0.462	0.1830	Yes
17	Gpc4	1007	0.449	0.1895	Yes
18	Gpc1	1028	0.445	0.1995	Yes
19	Pfkp	1142	0.427	0.2014	Yes
20	Kdm3a	1194	0.419	0.2082	Yes
21	Large1	1242	0.409	0.2151	Yes
22	Tes	1366	0.391	0.2153	Yes
23	Isg20	1410	0.386	0.2219	Yes
24	Ndst1	1459	0.378	0.2279	Yes
25	Cdkn1a	1465	0.376	0.2373	Yes
26	Ppp1r15a	1507	0.370	0.2436	Yes
27	Bhlhe40	1638	0.352	0.2423	Yes
28	Xpnpep1	1788	0.330	0.2388	Yes
29	Ero1a	2007	0.304	0.2290	Yes
30	Ddit4	2010	0.304	0.2368	Yes
31	Hk1	2066	0.297	0.2401	Yes
32	Slc2a3	2150	0.288	0.2409	Yes
33	Pam	2316	0.273	0.2346	Yes
34	Btg1	2355	0.269	0.2386	Yes
35	Vegfa	2420	0.264	0.2403	Yes
36	Ankzf1	2461	0.261	0.2438	Yes
37	Glrx	2482	0.259	0.2490	Yes
38	Klf6	2507	0.257	0.2537	Yes
39	Slc6a6	2621	0.244	0.2509	No
40	Hspa5	2868	0.219	0.2367	No
41	Fos	3188	0.190	0.2158	No
42	Klhl24	3306	0.181	0.2110	No
43	Tpi1	3333	0.179	0.2135	No
44	Casp6	3336	0.178	0.2180	No
45	Rora	3470	0.167	0.2116	No
46	Jmjd6	3501	0.165	0.2135	No
47	Wsb1	3556	0.160	0.2133	No
48	P4ha1	3567	0.160	0.2166	No
49	Tiparp	3796	0.143	0.2019	No
50	Gpi1	3848	0.139	0.2014	No
51	Myh9	3861	0.138	0.2040	No
52	Eno3	3875	0.137	0.2065	No
53	Aldoa	3932	0.132	0.2054	No
54	Ilvbl	3940	0.131	0.2083	No
55	Sap30	4415	0.094	0.1723	No
56	Prdx5	4422	0.093	0.1742	No
57	Ldha	4556	0.082	0.1655	No
58	Ugp2	4700	0.073	0.1559	No
59	Plaur	4723	0.072	0.1559	No
60	Pgk1	4795	0.068	0.1520	No
61	Cdkn1b	4977	0.056	0.1387	No
62	Selenbp1	5102	0.047	0.1299	No
63	Vhl	5205	0.039	0.1226	No
64	Ets1	5359	0.030	0.1110	No
65	Dusp1	5501	0.021	0.1001	No
66	Mxi1	5930	-0.006	0.0655	No
67	Nagk	5973	-0.010	0.0624	No
68	Pgm1	6095	-0.019	0.0531	No
69	Sdc2	6205	-0.026	0.0449	No
70	Kif5a	6891	-0.075	-0.0087	No
71	Hexa	6995	-0.083	-0.0149	No
72	Grhpr	7053	-0.087	-0.0173	No
73	Pim1	7415	-0.111	-0.0437	No
74	Angptl4	7421	-0.111	-0.0412	No
75	Plac8	8092	-0.159	-0.0914	No
76	Hk2	8193	-0.165	-0.0952	No
77	Bcl2	8226	-0.168	-0.0934	No
78	Pklr	8304	-0.173	-0.0952	No
79	Bnip3l	8352	-0.176	-0.0944	No
80	Gys1	8388	-0.178	-0.0926	No
81	Tpst2	8488	-0.185	-0.0958	No
82	Pfkfb3	8981	-0.224	-0.1299	No
83	Slc37a4	9027	-0.227	-0.1276	No
84	Irs2	9124	-0.234	-0.1293	No
85	Plin2	9160	-0.237	-0.1259	No
86	Gbe1	9423	-0.259	-0.1404	No
87	Cxcr4	9489	-0.263	-0.1389	No
88	Gcnt2	9509	-0.266	-0.1335	No
89	Gpc3	9547	-0.268	-0.1295	No
90	Galk1	9577	-0.270	-0.1248	No
91	Pdk1	9654	-0.276	-0.1237	No
92	Vldlr	9694	-0.280	-0.1196	No
93	Cavin1	10047	-0.314	-0.1400	No
94	Tpd52	10059	-0.315	-0.1326	No
95	Hdlbp	10178	-0.327	-0.1337	No
96	Tgm2	10242	-0.333	-0.1301	No
97	Zfp292	10266	-0.336	-0.1232	No
98	Siah2	10283	-0.337	-0.1157	No
99	Ddit3	10359	-0.346	-0.1127	No
100	Foxo3	10553	-0.366	-0.1188	No
101	Ndrg1	10556	-0.366	-0.1094	No
102	Lxn	10595	-0.372	-0.1028	No
103	Ids	10623	-0.375	-0.0952	No
104	Ampd3	10852	-0.402	-0.1032	No
105	Rbpj	10911	-0.409	-0.0972	No
106	Phkg1	11156	-0.439	-0.1056	No
107	Gaa	11160	-0.440	-0.0943	No
108	Anxa2	11381	-0.474	-0.0998	No
109	Fam162a	11401	-0.477	-0.0889	No
110	Mif	11531	-0.499	-0.0863	No
111	Slc2a1	11564	-0.504	-0.0758	No
112	Slc25a1	11590	-0.511	-0.0645	No
113	Cited2	11604	-0.514	-0.0521	No
114	Ier3	11689	-0.534	-0.0450	No
115	Pnrc1	11751	-0.550	-0.0356	No
116	Pfkl	11861	-0.580	-0.0293	No
117	Scarb1	11894	-0.590	-0.0165	No
118	B3galt6	11943	-0.605	-0.0046	No
119	Klf7	12316	-0.839	-0.0129	No
120	Pdk3	12360	-0.878	0.0066	No