Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group2_versus_Group3.Mast_Pheno.cls #Group2_versus_Group3_repos
Phenotype	Mast_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.19239251
Normalized Enrichment Score (NES)	-0.9018043
Nominal p-value	0.6792079
FDR q-value	0.9875123
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Tnfsf10	43	0.909	0.0262	No
2	Bcl2l11	50	0.891	0.0549	No
3	Gpx4	332	0.638	0.0529	No
4	Nedd9	343	0.633	0.0728	No
5	Il6	428	0.598	0.0856	No
6	Jun	441	0.595	0.1041	No
7	Prf1	474	0.585	0.1206	No
8	Cd69	526	0.566	0.1350	No
9	Rara	695	0.518	0.1383	No
10	Ank	747	0.507	0.1507	No
11	Tspo	928	0.465	0.1513	No
12	Isg20	1410	0.386	0.1249	No
13	Satb1	1452	0.379	0.1339	No
14	Cdkn1a	1465	0.376	0.1453	No
15	Pdgfrb	1927	0.313	0.1181	No
16	Sptan1	1967	0.309	0.1250	No
17	Bmf	2006	0.304	0.1319	No
18	Bax	2106	0.294	0.1335	No
19	Btg3	2353	0.270	0.1223	No
20	Bcl2l1	2454	0.262	0.1228	No
21	Cd44	2659	0.239	0.1141	No
22	Gch1	2668	0.239	0.1212	No
23	Ppp3r1	2958	0.210	0.1046	No
24	Sat1	3013	0.206	0.1070	No
25	Tnf	3018	0.205	0.1134	No
26	Dnaja1	3029	0.205	0.1192	No
27	Sc5d	3039	0.203	0.1252	No
28	Crebbp	3125	0.196	0.1247	No
29	Xiap	3329	0.179	0.1141	No
30	Casp6	3336	0.178	0.1194	No
31	Bcap31	3366	0.177	0.1228	No
32	Ppp2r5b	3367	0.177	0.1286	No
33	Psen2	3425	0.172	0.1296	No
34	Birc3	3476	0.167	0.1310	No
35	Rhot2	3483	0.167	0.1360	No
36	Pak1	3499	0.165	0.1402	No
37	Retsat	3548	0.161	0.1415	No
38	Sqstm1	3744	0.147	0.1305	No
39	Dap	3838	0.140	0.1275	No
40	Dffa	3883	0.136	0.1284	No
41	Etf1	4075	0.121	0.1168	No
42	Txnip	4115	0.117	0.1175	No
43	Cflar	4426	0.093	0.0954	No
44	Rhob	4562	0.081	0.0871	No
45	Lmna	4672	0.075	0.0807	No
46	Psen1	4688	0.074	0.0819	No
47	Wee1	4808	0.067	0.0744	No
48	Cdkn1b	4977	0.056	0.0626	No
49	Dap3	5206	0.039	0.0454	No
50	App	5344	0.031	0.0353	No
51	Casp1	5429	0.025	0.0293	No
52	Rock1	5643	0.011	0.0124	No
53	Nefh	5793	0.002	0.0003	No
54	Slc20a1	5873	-0.003	-0.0060	No
55	Ptk2	5901	-0.005	-0.0080	No
56	Casp7	5950	-0.008	-0.0116	No
57	Ctnnb1	6077	-0.017	-0.0213	No
58	Rnasel	6278	-0.031	-0.0365	No
59	Ppt1	6286	-0.032	-0.0360	No
60	Pea15a	6339	-0.035	-0.0391	No
61	Irf1	6343	-0.035	-0.0382	No
62	H1f0	6448	-0.043	-0.0452	No
63	Casp3	6556	-0.051	-0.0522	No
64	Tap1	6581	-0.053	-0.0525	No
65	Rela	6621	-0.055	-0.0538	No
66	Gsn	6823	-0.071	-0.0678	No
67	Dnajc3	6872	-0.074	-0.0693	No
68	Cyld	6879	-0.074	-0.0674	No
69	Dnm1l	7037	-0.085	-0.0773	No
70	Diablo	7041	-0.086	-0.0748	No
71	Casp2	7059	-0.087	-0.0733	No
72	Hmgb2	7061	-0.088	-0.0705	No
73	Madd	7221	-0.098	-0.0802	No
74	Tgfb2	7236	-0.099	-0.0781	No
75	Casp8	7247	-0.099	-0.0757	No
76	Gadd45a	7411	-0.111	-0.0853	No
77	Pdcd4	7447	-0.113	-0.0844	No
78	Mcl1	7824	-0.140	-0.1104	No
79	Btg2	7875	-0.144	-0.1098	No
80	Bid	7974	-0.151	-0.1128	No
81	Gsr	8037	-0.155	-0.1127	No
82	Top2a	8076	-0.158	-0.1106	No
83	Il18	8318	-0.174	-0.1245	No
84	Bnip3l	8352	-0.176	-0.1214	No
85	Smad7	8489	-0.185	-0.1264	No
86	Anxa1	8641	-0.196	-0.1323	No
87	Add1	8656	-0.198	-0.1269	No
88	Brca1	8752	-0.205	-0.1279	No
89	Igf2r	8874	-0.214	-0.1308	No
90	Ebp	8994	-0.224	-0.1331	No
91	Gna15	9129	-0.234	-0.1363	No
92	Cdc25b	9174	-0.239	-0.1321	No
93	Hgf	9208	-0.240	-0.1269	No
94	Bcl10	9304	-0.249	-0.1265	No
95	Krt18	9672	-0.278	-0.1472	No
96	Gpx1	9781	-0.287	-0.1465	No
97	Erbb3	10168	-0.326	-0.1672	No
98	Ifngr1	10323	-0.342	-0.1685	No
99	Ddit3	10359	-0.346	-0.1600	No
100	Lgals3	10520	-0.363	-0.1612	No
101	Timp3	10712	-0.385	-0.1641	No
102	Bcl2l2	11062	-0.428	-0.1784	Yes
103	Plcb2	11102	-0.433	-0.1674	Yes
104	Mgmt	11270	-0.457	-0.1660	Yes
105	Casp9	11342	-0.469	-0.1564	Yes
106	Sod1	11354	-0.471	-0.1419	Yes
107	Cdk2	11585	-0.509	-0.1440	Yes
108	Mmp2	11593	-0.512	-0.1278	Yes
109	Sod2	11599	-0.513	-0.1114	Yes
110	Ier3	11689	-0.534	-0.1012	Yes
111	Casp4	11690	-0.534	-0.0837	Yes
112	Vdac2	11706	-0.539	-0.0673	Yes
113	Tgfbr3	11719	-0.543	-0.0505	Yes
114	Timp2	11769	-0.554	-0.0364	Yes
115	F2r	11789	-0.560	-0.0196	Yes
116	Fdxr	11878	-0.587	-0.0076	Yes
117	Ifitm3	12139	-0.691	-0.0061	Yes
118	Ccnd2	12383	-0.932	0.0047	Yes