DatasetMast.Mast_Pheno.cls
#Group1_versus_Group4.Mast_Pheno.cls
#Group1_versus_Group4_repos
PhenotypeMast_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class3
GeneSetHALLMARK_OXIDATIVE_PHOSPHORYLATION
Enrichment Score (ES)-0.38774002
Normalized Enrichment Score (NES)-1.5709511
Nominal p-value0.017274473
FDR q-value0.18325092
FWER p-Value0.151
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_OXIDATIVE_PHOSPHORYLATION   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Ndufb8480.8970.0140No
2Phyh2440.6710.0115No
3Vdac23580.6200.0146No
4Ndufa15700.5450.0083No
5Pdhx7360.4960.0047No
6Dlst8520.4690.0047No
7Iscu8940.4600.0105No
8Idh211320.414-0.0005No
9Ndufab111370.4130.0074No
10Tomm70a12100.3990.0094No
11Ndufb612540.3920.0138No
12Atp1b116080.343-0.0082No
13Etfa18190.318-0.0190No
14Mtx218340.316-0.0138No
15Pmpca18490.315-0.0087No
16Dld18730.313-0.0043No
17Dlat19090.308-0.0010No
18Lrpprc20210.297-0.0042No
19Mrps2221040.287-0.0051No
20Mgst322290.275-0.0097No
21Vdac322860.270-0.0089No
22Atp6v1c123120.268-0.0056No
23Acadm24540.252-0.0121No
24Pdhb25070.249-0.0114No
25Mpc125270.247-0.0080No
26Aldh6a125800.242-0.0074No
27Surf125940.241-0.0037No
28Slc25a1227590.224-0.0126No
29Pdha130850.193-0.0352No
30Acadsb31270.189-0.0348No
31Opa131680.186-0.0343No
32Mtrr32090.184-0.0339No
33Afg3l234770.163-0.0525No
34Decr137460.142-0.0715No
35Mfn237950.138-0.0726No
36Nnt38250.136-0.0723No
37Mrps3038570.133-0.0722No
38Ndufa639260.127-0.0752No
39Mrpl1139350.127-0.0733No
40Atp6v1d39780.123-0.0743No
41Glud139970.122-0.0733No
42Tomm2240000.122-0.0710No
43Uqcr1043090.101-0.0942No
44Atp6v0b43460.098-0.0951No
45Timm1344440.090-0.1013No
46Oxa1l45810.080-0.1108No
47Acat146460.076-0.1145No
48Tcirg147770.066-0.1237No
49Fxn49730.052-0.1386No
50Timm950320.049-0.1424No
51Gpi152420.034-0.1587No
52Suclg153510.026-0.1670No
53Sucla253790.025-0.1687No
54Atp6v0c54160.022-0.1712No
55Slc25a1154730.019-0.1754No
56Atp6v0e54970.017-0.1769No
57Pdp157230.001-0.1952No
58Ogdh5782-0.000-0.2000No
59Nqo25796-0.001-0.2010No
60Etfb5873-0.006-0.2071No
61Gpx45921-0.010-0.2107No
62Ndufa45996-0.014-0.2165No
63Uqcrfs16046-0.017-0.2201No
64Ndufb26064-0.018-0.2211No
65Hadhb6183-0.025-0.2303No
66Ndufa36205-0.027-0.2314No
67Grpel16215-0.027-0.2316No
68Phb26321-0.035-0.2395No
69Slc25a36353-0.037-0.2413No
70Ndufa86378-0.038-0.2425No
71Uqcrq6403-0.040-0.2436No
72Atp6v1f6535-0.049-0.2533No
73Atp6v1h6562-0.051-0.2545No
74Mrpl156702-0.057-0.2646No
75Mrpl356785-0.063-0.2701No
76Got26824-0.066-0.2719No
77Ndufa96856-0.068-0.2730No
78Sdhd7033-0.079-0.2858No
79Ech17120-0.084-0.2911No
80Hccs7190-0.089-0.2950No
81Hspa97228-0.093-0.2961No
82Etfdh7305-0.097-0.3004No
83Vdac17422-0.105-0.3078No
84Cox7b7432-0.106-0.3064No
85Acaa1a7516-0.112-0.3109No
86Cox7c7591-0.117-0.3146No
87Casp77635-0.120-0.3157No
88Ndufa27928-0.140-0.3368No
89Hadha7932-0.140-0.3342No
90Cox177951-0.141-0.3329No
91Por8101-0.152-0.3420No
92Cox118115-0.153-0.3400No
93Fdx18123-0.153-0.3375No
94Alas18164-0.156-0.3377No
95Uqcrb8255-0.163-0.3418No
96Fh18310-0.166-0.3429No
97Cox7a28330-0.167-0.3411No
98Sdhb8433-0.174-0.3459No
99Mtrf18589-0.186-0.3549No
100Oat8631-0.188-0.3545No
101Cs8664-0.191-0.3532No
102Uqcrc18718-0.195-0.3537No
103Aco28915-0.211-0.3654No
104Ndufa79189-0.230-0.3831Yes
105Cox109190-0.230-0.3785Yes
106Slc25a209304-0.239-0.3830Yes
107Atp6v1e19351-0.243-0.3819Yes
108Ndufs69363-0.244-0.3779Yes
109Acadvl9401-0.247-0.3760Yes
110Mdh19444-0.252-0.3744Yes
111Timm109539-0.260-0.3769Yes
112Ndufb79560-0.262-0.3733Yes
113Timm17a9575-0.263-0.3692Yes
114Idh3a9581-0.263-0.3644Yes
115Ndufs19706-0.274-0.3690Yes
116Supv3l19716-0.275-0.3643Yes
117Atp6v1g19743-0.277-0.3609Yes
118Abcb79784-0.280-0.3585Yes
119Mrpl349926-0.294-0.3642Yes
120Cpt1a9960-0.297-0.3609Yes
121Sdha10008-0.301-0.3588Yes
122Prdx310059-0.306-0.3567Yes
123Cox5a10128-0.310-0.3561Yes
124Idh3g10163-0.313-0.3526Yes
125Ndufv110219-0.319-0.3508Yes
126Mrps1510231-0.320-0.3453Yes
127Cyc110259-0.322-0.3411Yes
128Retsat10305-0.326-0.3382Yes
129Bckdha10332-0.329-0.3338Yes
130Slc25a410350-0.331-0.3286Yes
131Ndufs810366-0.333-0.3232Yes
132Htra210397-0.336-0.3189Yes
133Cox1510401-0.336-0.3125Yes
134Cyb5a10484-0.345-0.3123Yes
135Polr2f10487-0.346-0.3055Yes
136Timm8b10543-0.353-0.3030Yes
137Mrps1110560-0.354-0.2972Yes
138Sdhc10567-0.355-0.2906Yes
139Cyb5r310589-0.359-0.2852Yes
140Immt10600-0.361-0.2788Yes
141Ndufb310650-0.367-0.2755Yes
142Ndufs210790-0.383-0.2792Yes
143Ndufc210853-0.391-0.2764Yes
144Uqcrh10879-0.394-0.2706Yes
145Echs110896-0.396-0.2640Yes
146Slc25a510923-0.399-0.2582Yes
147Ndufs710987-0.408-0.2552Yes
148Cox5b11140-0.428-0.2591Yes
149Timm5011142-0.428-0.2506Yes
150Rhot111170-0.431-0.2442Yes
151Cox7a2l11174-0.433-0.2358Yes
152Idh3b11233-0.444-0.2317Yes
153Eci111274-0.451-0.2260Yes
154Ndufb511311-0.457-0.2198Yes
155Atp6ap111351-0.464-0.2137Yes
156Uqcr1111364-0.466-0.2054Yes
157Cox8a11430-0.481-0.2011Yes
158Mrps1211587-0.510-0.2037Yes
159Rhot211630-0.518-0.1968Yes
160Bax11650-0.522-0.1879Yes
161Cox6a111687-0.531-0.1803Yes
162Mdh211772-0.552-0.1761Yes
163Ndufs411821-0.568-0.1687Yes
164Atp5pb11876-0.584-0.1615Yes
165Ndufv211892-0.588-0.1510Yes
166Ldha11956-0.611-0.1439Yes
167Idh111973-0.617-0.1329Yes
168Ndufa511978-0.619-0.1209Yes
169Ndufc112066-0.645-0.1152Yes
170Ndufs312074-0.651-0.1027Yes
171Aifm112084-0.657-0.0904Yes
172Hsd17b1012259-0.776-0.0891Yes
173Cox6b112293-0.809-0.0757Yes
174Cox6c12369-0.918-0.0635Yes
175Cox4i112386-0.960-0.0456Yes
176Uqcrc212414-1.084-0.0262Yes
177Acaa212438-1.4220.0002Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_OXIDATIVE_PHOSPHORYLATION   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_OXIDATIVE_PHOSPHORYLATION: Random ES distribution   
Gene set null distribution of ES for HALLMARK_OXIDATIVE_PHOSPHORYLATION