Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group1_versus_Group4.Mast_Pheno.cls #Group1_versus_Group4_repos
Phenotype	Mast_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	0
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.2884158
Normalized Enrichment Score (NES)	1.1003172
Nominal p-value	0.33333334
FDR q-value	1.0
FWER p-Value	0.995

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Cd44	134	0.761	0.0327	Yes
2	Jun	176	0.726	0.0709	Yes
3	Vegfa	212	0.695	0.1078	Yes
4	Gja1	287	0.653	0.1392	Yes
5	Sat1	396	0.601	0.1648	Yes
6	Vcan	476	0.573	0.1912	Yes
7	Notch2	556	0.549	0.2162	Yes
8	Rhob	605	0.535	0.2429	Yes
9	Plaur	751	0.493	0.2593	Yes
10	Serpine2	881	0.463	0.2754	Yes
11	Copa	1029	0.436	0.2884	Yes
12	Itga5	1500	0.357	0.2708	No
13	Dst	2089	0.289	0.2398	No
14	Cald1	3036	0.198	0.1747	No
15	Vegfc	3086	0.193	0.1818	No
16	Lamc1	3091	0.193	0.1925	No
17	Calu	3115	0.190	0.2015	No
18	Plod1	3629	0.151	0.1687	No
19	Sntb1	3729	0.144	0.1689	No
20	Gpc1	3818	0.136	0.1696	No
21	Colgalt1	4041	0.118	0.1584	No
22	Ecm2	4275	0.103	0.1455	No
23	Ecm1	4363	0.096	0.1440	No
24	Pdgfrb	4415	0.092	0.1451	No
25	Pvr	4502	0.086	0.1430	No
26	Itgb1	4514	0.085	0.1470	No
27	Capg	4902	0.057	0.1190	No
28	Fap	5162	0.040	0.1003	No
29	Tnfaip3	5318	0.028	0.0894	No
30	Il15	5381	0.025	0.0858	No
31	Timp3	5432	0.021	0.0829	No
32	P3h1	5572	0.012	0.0724	No
33	Mmp2	5704	0.002	0.0619	No
34	Fbn1	5753	0.000	0.0580	No
35	Thbs1	5759	0.000	0.0576	No
36	Emp3	6344	-0.036	0.0125	No
37	Pmepa1	6439	-0.043	0.0074	No
38	Mmp14	6528	-0.048	0.0030	No
39	Col5a1	6575	-0.051	0.0022	No
40	Itgb3	6713	-0.058	-0.0056	No
41	Igfbp4	7034	-0.079	-0.0269	No
42	Tpm1	7092	-0.082	-0.0268	No
43	Flna	7143	-0.086	-0.0259	No
44	Itgav	7198	-0.090	-0.0251	No
45	Id2	7232	-0.093	-0.0225	No
46	Ppib	7413	-0.105	-0.0310	No
47	Il6	7463	-0.108	-0.0288	No
48	Plod2	7741	-0.127	-0.0439	No
49	Mcm7	7780	-0.130	-0.0396	No
50	Itga2	7975	-0.143	-0.0471	No
51	Sfrp4	8408	-0.172	-0.0721	No
52	Tgfb1	8568	-0.184	-0.0745	No
53	Wipf1	8599	-0.186	-0.0663	No
54	Lgals1	8828	-0.205	-0.0730	No
55	Glipr1	8931	-0.213	-0.0691	No
56	Bmp1	8995	-0.216	-0.0618	No
57	Ntm	9064	-0.220	-0.0547	No
58	Qsox1	9920	-0.293	-0.1070	No
59	Vim	10376	-0.334	-0.1247	No
60	Cap2	10684	-0.370	-0.1284	No
61	Fuca1	10695	-0.371	-0.1080	No
62	Plod3	11187	-0.434	-0.1228	No
63	Tpm4	11215	-0.440	-0.0998	No
64	Tgm2	11346	-0.464	-0.0838	No
65	Sgcb	11371	-0.467	-0.0591	No
66	Tgfbr3	11424	-0.480	-0.0358	No
67	Gem	11785	-0.555	-0.0332	No
68	Basp1	12086	-0.659	-0.0197	No
69	Gadd45a	12321	-0.845	0.0097	No