Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group1_versus_Group4.Mast_Pheno.cls #Group1_versus_Group4_repos
Phenotype	Mast_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	0
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	0.22929195
Normalized Enrichment Score (NES)	1.0584472
Nominal p-value	0.31827113
FDR q-value	0.8394622
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	App	72	0.844	0.0192	Yes
2	Ppp2r5b	121	0.776	0.0383	Yes
3	Cd44	134	0.761	0.0600	Yes
4	Jun	176	0.726	0.0782	Yes
5	Gsn	340	0.626	0.0835	Yes
6	Vdac2	358	0.620	0.1006	Yes
7	Ptk2	382	0.608	0.1167	Yes
8	Psen1	390	0.603	0.1341	Yes
9	Sat1	396	0.601	0.1515	Yes
10	Cflar	486	0.569	0.1612	Yes
11	Cdkn1b	522	0.558	0.1749	Yes
12	Rhob	605	0.535	0.1841	Yes
13	Igf2r	693	0.509	0.1922	Yes
14	Birc3	720	0.501	0.2049	Yes
15	Rela	721	0.500	0.2198	Yes
16	Mgmt	1053	0.431	0.2057	Yes
17	Smad7	1113	0.420	0.2134	Yes
18	Wee1	1238	0.394	0.2151	Yes
19	Bcl2l1	1328	0.381	0.2191	Yes
20	Tgfb2	1409	0.370	0.2236	Yes
21	Casp9	1472	0.361	0.2293	Yes
22	Sod1	1771	0.325	0.2147	No
23	Rock1	1897	0.309	0.2138	No
24	Bid	2102	0.287	0.2058	No
25	Tnf	2297	0.269	0.1980	No
26	Sptan1	2474	0.251	0.1912	No
27	Ppt1	2690	0.232	0.1806	No
28	Bmf	2747	0.225	0.1828	No
29	Lgals3	2989	0.201	0.1692	No
30	Irf1	3052	0.196	0.1700	No
31	Dnaja1	3151	0.188	0.1676	No
32	Gsr	3153	0.187	0.1731	No
33	Madd	3161	0.186	0.1780	No
34	Nefh	3316	0.178	0.1708	No
35	Casp2	3566	0.156	0.1552	No
36	Prf1	3598	0.154	0.1573	No
37	Ccnd2	3800	0.138	0.1451	No
38	Cyld	3975	0.123	0.1346	No
39	Hgf	4267	0.104	0.1141	No
40	Rara	4342	0.098	0.1110	No
41	Pdgfrb	4415	0.092	0.1079	No
42	Add1	4478	0.087	0.1054	No
43	Tap1	4654	0.075	0.0935	No
44	Bcap31	4687	0.072	0.0930	No
45	Dnajc3	4976	0.052	0.0712	No
46	Timp2	4985	0.052	0.0720	No
47	Anxa1	5093	0.045	0.0647	No
48	Btg3	5106	0.045	0.0651	No
49	Mcl1	5131	0.042	0.0644	No
50	Cdk2	5254	0.034	0.0555	No
51	Timp3	5432	0.021	0.0417	No
52	Bcl2l2	5440	0.021	0.0418	No
53	Ifngr1	5532	0.015	0.0348	No
54	Pdcd4	5618	0.009	0.0282	No
55	Dffa	5690	0.003	0.0225	No
56	Mmp2	5704	0.002	0.0215	No
57	Gpx4	5921	-0.010	0.0043	No
58	Pak1	5929	-0.010	0.0040	No
59	Diablo	5948	-0.011	0.0029	No
60	Slc20a1	6150	-0.024	-0.0127	No
61	Brca1	6192	-0.026	-0.0152	No
62	Etf1	6459	-0.044	-0.0355	No
63	Cdkn1a	6512	-0.047	-0.0383	No
64	Bnip3l	6518	-0.048	-0.0373	No
65	Tspo	6733	-0.060	-0.0529	No
66	Ctnnb1	6744	-0.060	-0.0519	No
67	Psen2	6895	-0.070	-0.0620	No
68	Dap3	6898	-0.070	-0.0601	No
69	Cdc25b	6953	-0.074	-0.0623	No
70	Il6	7463	-0.108	-0.1004	No
71	Lmna	7520	-0.112	-0.1016	No
72	Sc5d	7577	-0.116	-0.1027	No
73	Satb1	7594	-0.117	-0.1005	No
74	Casp7	7635	-0.120	-0.1002	No
75	Ifitm3	7660	-0.121	-0.0986	No
76	Gna15	7664	-0.122	-0.0952	No
77	Txnip	7678	-0.123	-0.0926	No
78	Sqstm1	7706	-0.125	-0.0911	No
79	Erbb3	8128	-0.153	-0.1207	No
80	Dnm1l	8248	-0.162	-0.1255	No
81	Crebbp	8314	-0.166	-0.1259	No
82	Pea15a	8392	-0.171	-0.1270	No
83	Ier3	8607	-0.187	-0.1389	No
84	Plcb2	8731	-0.196	-0.1430	No
85	Hmgb2	8831	-0.205	-0.1450	No
86	Btg2	8841	-0.206	-0.1396	No
87	Krt18	8843	-0.206	-0.1336	No
88	Isg20	8902	-0.210	-0.1320	No
89	Xiap	9055	-0.220	-0.1379	No
90	Nedd9	9376	-0.246	-0.1565	No
91	Ddit3	9533	-0.260	-0.1615	No
92	Casp4	9739	-0.277	-0.1699	No
93	Casp3	9773	-0.279	-0.1643	No
94	Rnasel	9870	-0.288	-0.1635	No
95	Top2a	9959	-0.297	-0.1619	No
96	Casp8	10017	-0.301	-0.1575	No
97	Retsat	10305	-0.326	-0.1711	No
98	Ebp	10331	-0.329	-0.1634	No
99	Il18	10413	-0.337	-0.1600	No
100	Bcl2l11	10440	-0.341	-0.1520	No
101	Casp6	10515	-0.349	-0.1476	No
102	Casp1	10864	-0.392	-0.1642	No
103	F2r	11013	-0.412	-0.1640	No
104	Gch1	11069	-0.419	-0.1560	No
105	H1f0	11096	-0.423	-0.1456	No
106	Tgfbr3	11424	-0.480	-0.1579	No
107	Dap	11510	-0.494	-0.1501	No
108	Rhot2	11630	-0.518	-0.1444	No
109	Bax	11650	-0.522	-0.1305	No
110	Fdxr	11731	-0.540	-0.1209	No
111	Sod2	11907	-0.595	-0.1175	No
112	Cd69	11920	-0.600	-0.1006	No
113	Tnfsf10	11950	-0.610	-0.0849	No
114	Ppp3r1	12050	-0.640	-0.0739	No
115	Gadd45a	12321	-0.845	-0.0707	No
116	Ank	12336	-0.856	-0.0465	No
117	Gpx1	12368	-0.917	-0.0218	No
118	Bcl10	12375	-0.930	0.0054	No