| Dataset | Mast.Mast_Pheno.cls #Group1_versus_Group3.Mast_Pheno.cls #Group1_versus_Group3_repos |
| Phenotype | Mast_Pheno.cls#Group1_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_LATE |
| Enrichment Score (ES) | -0.21669556 |
| Normalized Enrichment Score (NES) | -1.0224736 |
| Nominal p-value | 0.3830645 |
| FDR q-value | 0.80396336 |
| FWER p-Value | 1.0 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Cd44 | 161 | 0.734 | 0.0120 | No |
| 2 | Il17rb | 173 | 0.725 | 0.0358 | No |
| 3 | Tob1 | 516 | 0.560 | 0.0272 | No |
| 4 | Idh2 | 598 | 0.537 | 0.0389 | No |
| 5 | Rabep1 | 726 | 0.502 | 0.0457 | No |
| 6 | Papss2 | 795 | 0.485 | 0.0567 | No |
| 7 | Tiam1 | 865 | 0.467 | 0.0670 | No |
| 8 | Cd9 | 894 | 0.462 | 0.0805 | No |
| 9 | Etfb | 1147 | 0.413 | 0.0741 | No |
| 10 | Tspan13 | 1252 | 0.395 | 0.0792 | No |
| 11 | Ncor2 | 1322 | 0.384 | 0.0867 | No |
| 12 | Abca3 | 1391 | 0.373 | 0.0939 | No |
| 13 | Ppif | 1590 | 0.347 | 0.0897 | No |
| 14 | Large1 | 1623 | 0.344 | 0.0988 | No |
| 15 | Jak1 | 1647 | 0.340 | 0.1085 | No |
| 16 | Dnajc1 | 1829 | 0.318 | 0.1047 | No |
| 17 | Pgr | 1894 | 0.311 | 0.1101 | No |
| 18 | Gins2 | 1922 | 0.308 | 0.1184 | No |
| 19 | Gfus | 2069 | 0.295 | 0.1166 | No |
| 20 | Fos | 2145 | 0.286 | 0.1202 | No |
| 21 | Aff1 | 2190 | 0.282 | 0.1263 | No |
| 22 | Slc7a5 | 2297 | 0.272 | 0.1270 | No |
| 23 | Ugdh | 2387 | 0.265 | 0.1288 | No |
| 24 | Tmprss3 | 2420 | 0.261 | 0.1351 | No |
| 25 | Nab2 | 2444 | 0.259 | 0.1421 | No |
| 26 | Isg20 | 2449 | 0.259 | 0.1506 | No |
| 27 | Impa2 | 2589 | 0.246 | 0.1477 | No |
| 28 | Tjp3 | 2594 | 0.246 | 0.1557 | No |
| 29 | Fdft1 | 2724 | 0.234 | 0.1533 | No |
| 30 | Blvrb | 2777 | 0.229 | 0.1569 | No |
| 31 | Cish | 2790 | 0.228 | 0.1636 | No |
| 32 | Igfbp4 | 3022 | 0.208 | 0.1520 | No |
| 33 | Flnb | 3029 | 0.207 | 0.1585 | No |
| 34 | Slc29a1 | 3257 | 0.188 | 0.1466 | No |
| 35 | Unc13b | 3306 | 0.184 | 0.1489 | No |
| 36 | Aldh3a2 | 3311 | 0.183 | 0.1549 | No |
| 37 | Ptpn6 | 3543 | 0.164 | 0.1417 | No |
| 38 | Xbp1 | 3594 | 0.160 | 0.1431 | No |
| 39 | Rab31 | 3730 | 0.150 | 0.1373 | No |
| 40 | Itpk1 | 4078 | 0.121 | 0.1133 | No |
| 41 | Rbbp8 | 4763 | 0.074 | 0.0604 | No |
| 42 | Top2a | 4811 | 0.071 | 0.0590 | No |
| 43 | Bag1 | 4878 | 0.065 | 0.0558 | No |
| 44 | Fkbp4 | 4923 | 0.061 | 0.0544 | No |
| 45 | Siah2 | 5138 | 0.047 | 0.0386 | No |
| 46 | Sgk1 | 5511 | 0.021 | 0.0092 | No |
| 47 | Slc24a3 | 5723 | 0.009 | -0.0076 | No |
| 48 | Cdh1 | 5791 | 0.004 | -0.0129 | No |
| 49 | Dusp2 | 5840 | 0.001 | -0.0167 | No |
| 50 | S100a9 | 5865 | 0.000 | -0.0187 | No |
| 51 | Dcxr | 6014 | -0.013 | -0.0303 | No |
| 52 | Dnajc12 | 6075 | -0.017 | -0.0346 | No |
| 53 | Anxa9 | 6187 | -0.024 | -0.0427 | No |
| 54 | Stil | 6238 | -0.027 | -0.0459 | No |
| 55 | Elovl5 | 6336 | -0.033 | -0.0526 | No |
| 56 | Slc16a1 | 6580 | -0.050 | -0.0706 | No |
| 57 | Btg3 | 6594 | -0.051 | -0.0699 | No |
| 58 | Mocs2 | 6630 | -0.053 | -0.0709 | No |
| 59 | Batf | 7005 | -0.078 | -0.0986 | No |
| 60 | Nxt1 | 7107 | -0.086 | -0.1039 | No |
| 61 | Ptger3 | 7155 | -0.090 | -0.1046 | No |
| 62 | Kif20a | 7261 | -0.096 | -0.1099 | No |
| 63 | Fabp5 | 7263 | -0.096 | -0.1067 | No |
| 64 | Atp2b4 | 7302 | -0.098 | -0.1064 | No |
| 65 | Chpt1 | 7468 | -0.108 | -0.1161 | No |
| 66 | Homer2 | 7685 | -0.122 | -0.1294 | No |
| 67 | Id2 | 7842 | -0.133 | -0.1375 | No |
| 68 | Add3 | 8034 | -0.147 | -0.1480 | No |
| 69 | Il6st | 8112 | -0.153 | -0.1490 | No |
| 70 | Abhd2 | 8205 | -0.161 | -0.1510 | No |
| 71 | Cox6c | 8246 | -0.163 | -0.1487 | No |
| 72 | Rps6ka2 | 8281 | -0.166 | -0.1458 | No |
| 73 | Rnaseh2a | 8519 | -0.184 | -0.1587 | No |
| 74 | Mettl3 | 8748 | -0.200 | -0.1704 | No |
| 75 | Plaat3 | 8787 | -0.203 | -0.1665 | No |
| 76 | Pdcd4 | 8798 | -0.204 | -0.1604 | No |
| 77 | Xrcc3 | 8983 | -0.216 | -0.1680 | No |
| 78 | Car2 | 9419 | -0.251 | -0.1947 | No |
| 79 | Cdc6 | 9514 | -0.259 | -0.1935 | No |
| 80 | Nrip1 | 9560 | -0.264 | -0.1881 | No |
| 81 | Prkar2b | 9635 | -0.268 | -0.1850 | No |
| 82 | Gale | 9647 | -0.269 | -0.1767 | No |
| 83 | Hmgcs2 | 9897 | -0.291 | -0.1870 | No |
| 84 | Myb | 10009 | -0.300 | -0.1858 | No |
| 85 | Dynlt3 | 10344 | -0.332 | -0.2015 | No |
| 86 | Jak2 | 10357 | -0.333 | -0.1912 | No |
| 87 | Ass1 | 10673 | -0.368 | -0.2041 | Yes |
| 88 | Bcl2 | 10705 | -0.372 | -0.1940 | Yes |
| 89 | Sord | 10770 | -0.378 | -0.1863 | Yes |
| 90 | Plk4 | 10917 | -0.396 | -0.1846 | Yes |
| 91 | Cacna2d2 | 11004 | -0.408 | -0.1777 | Yes |
| 92 | Pkp3 | 11006 | -0.408 | -0.1639 | Yes |
| 93 | Gla | 11063 | -0.415 | -0.1543 | Yes |
| 94 | Fkbp5 | 11183 | -0.434 | -0.1491 | Yes |
| 95 | Arl3 | 11192 | -0.435 | -0.1349 | Yes |
| 96 | Cdc20 | 11233 | -0.442 | -0.1231 | Yes |
| 97 | Opn3 | 11334 | -0.459 | -0.1156 | Yes |
| 98 | Scarb1 | 11380 | -0.466 | -0.1033 | Yes |
| 99 | Amfr | 11783 | -0.550 | -0.1172 | Yes |
| 100 | Snx10 | 11828 | -0.565 | -0.1015 | Yes |
| 101 | Hspa4l | 11851 | -0.572 | -0.0837 | Yes |
| 102 | Slc22a5 | 12001 | -0.632 | -0.0743 | Yes |
| 103 | Dhcr7 | 12097 | -0.664 | -0.0594 | Yes |
| 104 | Kcnk5 | 12123 | -0.675 | -0.0384 | Yes |
| 105 | Slc26a2 | 12341 | -0.870 | -0.0263 | Yes |
| 106 | Llgl2 | 12402 | -1.008 | 0.0032 | Yes |

