| Dataset | Mast.Mast_Pheno.cls #Group1_versus_Group3.Mast_Pheno.cls #Group1_versus_Group3_repos |
| Phenotype | Mast_Pheno.cls#Group1_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | -0.19634491 |
| Normalized Enrichment Score (NES) | -0.93782413 |
| Nominal p-value | 0.6147705 |
| FDR q-value | 0.88832253 |
| FWER p-Value | 1.0 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Rara | 74 | 0.865 | 0.0196 | No |
| 2 | Thsd4 | 132 | 0.773 | 0.0379 | No |
| 3 | Cd44 | 161 | 0.734 | 0.0574 | No |
| 4 | Il17rb | 173 | 0.725 | 0.0780 | No |
| 5 | P2ry2 | 409 | 0.596 | 0.0766 | No |
| 6 | Tob1 | 516 | 0.560 | 0.0846 | No |
| 7 | Gja1 | 762 | 0.492 | 0.0793 | No |
| 8 | Papss2 | 795 | 0.485 | 0.0911 | No |
| 9 | Tiam1 | 865 | 0.467 | 0.0993 | No |
| 10 | Inpp5f | 868 | 0.466 | 0.1130 | No |
| 11 | Bhlhe40 | 949 | 0.451 | 0.1199 | No |
| 12 | Sh3bp5 | 967 | 0.447 | 0.1317 | No |
| 13 | Klf10 | 1013 | 0.437 | 0.1411 | No |
| 14 | Ncor2 | 1322 | 0.384 | 0.1275 | No |
| 15 | Abca3 | 1391 | 0.373 | 0.1330 | No |
| 16 | Tgif2 | 1523 | 0.356 | 0.1329 | No |
| 17 | Ppif | 1590 | 0.347 | 0.1379 | No |
| 18 | Nav2 | 1736 | 0.329 | 0.1358 | No |
| 19 | Gab2 | 1804 | 0.321 | 0.1399 | No |
| 20 | Pgr | 1894 | 0.311 | 0.1419 | No |
| 21 | Mpped2 | 1948 | 0.305 | 0.1466 | No |
| 22 | Endod1 | 1970 | 0.304 | 0.1539 | No |
| 23 | Unc119 | 2117 | 0.289 | 0.1507 | No |
| 24 | Fos | 2145 | 0.286 | 0.1569 | No |
| 25 | Aff1 | 2190 | 0.282 | 0.1617 | No |
| 26 | Slc7a5 | 2297 | 0.272 | 0.1612 | No |
| 27 | Celsr1 | 2311 | 0.272 | 0.1682 | No |
| 28 | Tmprss3 | 2420 | 0.261 | 0.1672 | No |
| 29 | Tjp3 | 2594 | 0.246 | 0.1604 | No |
| 30 | Fdft1 | 2724 | 0.234 | 0.1569 | No |
| 31 | Sec14l2 | 2766 | 0.230 | 0.1604 | No |
| 32 | Blvrb | 2777 | 0.229 | 0.1664 | No |
| 33 | Cish | 2790 | 0.228 | 0.1721 | No |
| 34 | Mybl1 | 2995 | 0.210 | 0.1618 | No |
| 35 | Igfbp4 | 3022 | 0.208 | 0.1659 | No |
| 36 | Flnb | 3029 | 0.207 | 0.1715 | No |
| 37 | Tubb2b | 3095 | 0.201 | 0.1722 | No |
| 38 | Svil | 3162 | 0.196 | 0.1726 | No |
| 39 | Rrp12 | 3212 | 0.191 | 0.1743 | No |
| 40 | Kdm4b | 3270 | 0.187 | 0.1753 | No |
| 41 | Cant1 | 3400 | 0.176 | 0.1700 | No |
| 42 | Gfra1 | 3573 | 0.162 | 0.1609 | No |
| 43 | Xbp1 | 3594 | 0.160 | 0.1640 | No |
| 44 | Mast4 | 3677 | 0.154 | 0.1619 | No |
| 45 | Rab31 | 3730 | 0.150 | 0.1621 | No |
| 46 | Lrig1 | 3750 | 0.148 | 0.1650 | No |
| 47 | Itpk1 | 4078 | 0.121 | 0.1420 | No |
| 48 | Asb13 | 4150 | 0.116 | 0.1397 | No |
| 49 | Retreg1 | 4370 | 0.103 | 0.1250 | No |
| 50 | Rbbp8 | 4763 | 0.074 | 0.0954 | No |
| 51 | Bag1 | 4878 | 0.065 | 0.0880 | No |
| 52 | Fkbp4 | 4923 | 0.061 | 0.0863 | No |
| 53 | Rasgrp1 | 5112 | 0.049 | 0.0725 | No |
| 54 | Siah2 | 5138 | 0.047 | 0.0719 | No |
| 55 | Tiparp | 5446 | 0.025 | 0.0477 | No |
| 56 | Elf1 | 5493 | 0.022 | 0.0446 | No |
| 57 | Slc24a3 | 5723 | 0.009 | 0.0263 | No |
| 58 | Tmem164 | 5806 | 0.003 | 0.0198 | No |
| 59 | Ar | 5930 | -0.004 | 0.0099 | No |
| 60 | Hes1 | 5945 | -0.006 | 0.0090 | No |
| 61 | Kazn | 6144 | -0.021 | -0.0065 | No |
| 62 | Anxa9 | 6187 | -0.024 | -0.0092 | No |
| 63 | Elovl5 | 6336 | -0.033 | -0.0202 | No |
| 64 | Slc19a2 | 6396 | -0.037 | -0.0239 | No |
| 65 | Akap1 | 6537 | -0.047 | -0.0339 | No |
| 66 | Slc16a1 | 6580 | -0.050 | -0.0358 | No |
| 67 | Rhobtb3 | 6943 | -0.073 | -0.0630 | No |
| 68 | Ablim1 | 7062 | -0.082 | -0.0701 | No |
| 69 | Nxt1 | 7107 | -0.086 | -0.0711 | No |
| 70 | Chpt1 | 7468 | -0.108 | -0.0972 | No |
| 71 | Med13l | 7714 | -0.125 | -0.1133 | No |
| 72 | Add3 | 8034 | -0.147 | -0.1349 | No |
| 73 | Il6st | 8112 | -0.153 | -0.1366 | No |
| 74 | Cbfa2t3 | 8201 | -0.160 | -0.1390 | No |
| 75 | Abhd2 | 8205 | -0.161 | -0.1344 | No |
| 76 | Rps6ka2 | 8281 | -0.166 | -0.1356 | No |
| 77 | Slc37a1 | 8305 | -0.167 | -0.1325 | No |
| 78 | Abat | 8594 | -0.190 | -0.1503 | No |
| 79 | Mybbp1a | 8606 | -0.191 | -0.1455 | No |
| 80 | Plaat3 | 8787 | -0.203 | -0.1541 | No |
| 81 | Mlph | 8814 | -0.205 | -0.1501 | No |
| 82 | Tbc1d30 | 9092 | -0.225 | -0.1659 | No |
| 83 | Isg20l2 | 9411 | -0.249 | -0.1843 | No |
| 84 | Nrip1 | 9560 | -0.264 | -0.1885 | Yes |
| 85 | Myc | 9576 | -0.265 | -0.1819 | Yes |
| 86 | Fasn | 9663 | -0.270 | -0.1809 | Yes |
| 87 | Ugcg | 9697 | -0.274 | -0.1754 | Yes |
| 88 | Deptor | 9707 | -0.274 | -0.1681 | Yes |
| 89 | Nadsyn1 | 9974 | -0.298 | -0.1808 | Yes |
| 90 | Myb | 10009 | -0.300 | -0.1747 | Yes |
| 91 | Pex11a | 10135 | -0.312 | -0.1756 | Yes |
| 92 | Dhrs3 | 10328 | -0.330 | -0.1813 | Yes |
| 93 | Dynlt3 | 10344 | -0.332 | -0.1727 | Yes |
| 94 | Jak2 | 10357 | -0.333 | -0.1638 | Yes |
| 95 | Igf1r | 10454 | -0.343 | -0.1615 | Yes |
| 96 | Tgm2 | 10478 | -0.345 | -0.1531 | Yes |
| 97 | Bcl2 | 10705 | -0.372 | -0.1604 | Yes |
| 98 | Krt18 | 10953 | -0.401 | -0.1686 | Yes |
| 99 | Gla | 11063 | -0.415 | -0.1651 | Yes |
| 100 | Adcy9 | 11102 | -0.422 | -0.1557 | Yes |
| 101 | Mindy1 | 11124 | -0.425 | -0.1448 | Yes |
| 102 | Slc39a6 | 11160 | -0.432 | -0.1348 | Yes |
| 103 | Fkbp5 | 11183 | -0.434 | -0.1238 | Yes |
| 104 | Arl3 | 11192 | -0.435 | -0.1115 | Yes |
| 105 | B4galt1 | 11206 | -0.438 | -0.0996 | Yes |
| 106 | Opn3 | 11334 | -0.459 | -0.0963 | Yes |
| 107 | Scarb1 | 11380 | -0.466 | -0.0861 | Yes |
| 108 | Amfr | 11783 | -0.550 | -0.1024 | Yes |
| 109 | Med24 | 11788 | -0.551 | -0.0864 | Yes |
| 110 | Slc2a1 | 11814 | -0.561 | -0.0718 | Yes |
| 111 | Rab17 | 11932 | -0.604 | -0.0634 | Yes |
| 112 | Slc22a5 | 12001 | -0.632 | -0.0502 | Yes |
| 113 | Dhcr7 | 12097 | -0.664 | -0.0382 | Yes |
| 114 | Kcnk5 | 12123 | -0.675 | -0.0203 | Yes |
| 115 | Syngr1 | 12131 | -0.679 | -0.0007 | Yes |
| 116 | Slc26a2 | 12341 | -0.870 | 0.0081 | Yes |

