Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group1_versus_Group3.Mast_Pheno.cls #Group1_versus_Group3_repos
Phenotype	Mast_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	0
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.3351547
Normalized Enrichment Score (NES)	1.3330848
Nominal p-value	0.0729783
FDR q-value	0.4221589
FWER p-Value	0.762

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Jun	36	0.971	0.0412	Yes
2	Pdgfrb	102	0.821	0.0732	Yes
3	Cd44	161	0.734	0.1019	Yes
4	Vegfa	222	0.695	0.1286	Yes
5	Il6	411	0.596	0.1404	Yes
6	Vegfc	468	0.574	0.1620	Yes
7	Vcan	471	0.573	0.1878	Yes
8	Mcm7	498	0.565	0.2114	Yes
9	Fap	744	0.498	0.2142	Yes
10	Gja1	762	0.492	0.2351	Yes
11	Rhob	854	0.471	0.2492	Yes
12	Serpine2	886	0.463	0.2677	Yes
13	Tnfaip3	983	0.444	0.2801	Yes
14	Itgav	1033	0.432	0.2957	Yes
15	Sntb1	1224	0.399	0.2985	Yes
16	Basp1	1275	0.391	0.3122	Yes
17	Gpc1	1403	0.372	0.3188	Yes
18	Ecm1	1410	0.371	0.3352	Yes
19	Pmepa1	1638	0.340	0.3323	No
20	Flna	1990	0.302	0.3176	No
21	Ppib	2016	0.300	0.3292	No
22	Tpm1	2124	0.288	0.3336	No
23	Notch2	2269	0.275	0.3345	No
24	Sfrp4	2700	0.236	0.3104	No
25	Plod1	2980	0.211	0.2975	No
26	Igfbp4	3022	0.208	0.3036	No
27	Col5a1	3093	0.201	0.3071	No
28	Ecm2	3114	0.200	0.3145	No
29	Copa	3746	0.149	0.2703	No
30	Itgb3	4303	0.107	0.2302	No
31	Pvr	4317	0.107	0.2340	No
32	Plod3	4678	0.080	0.2085	No
33	Cald1	4839	0.069	0.1987	No
34	Dst	4880	0.065	0.1984	No
35	Qsox1	4899	0.063	0.1998	No
36	Colgalt1	4902	0.063	0.2025	No
37	Ntm	5218	0.041	0.1789	No
38	Plaur	5388	0.029	0.1666	No
39	Plod2	5566	0.018	0.1531	No
40	Emp3	5687	0.011	0.1439	No
41	Thbs1	5863	0.000	0.1298	No
42	Calu	6557	-0.048	0.0759	No
43	Tgfb1	6608	-0.052	0.0742	No
44	Lamc1	6688	-0.057	0.0705	No
45	Itgb1	7014	-0.078	0.0477	No
46	Il15	7410	-0.104	0.0205	No
47	P3h1	7659	-0.120	0.0059	No
48	Vim	7722	-0.125	0.0066	No
49	Capg	7750	-0.127	0.0102	No
50	Id2	7842	-0.133	0.0089	No
51	Bmp1	8860	-0.208	-0.0639	No
52	Glipr1	9119	-0.227	-0.0744	No
53	Fbn1	9128	-0.227	-0.0647	No
54	Lgals1	9229	-0.235	-0.0621	No
55	Itga5	9562	-0.264	-0.0770	No
56	Sat1	9963	-0.297	-0.0958	No
57	Mmp14	10252	-0.324	-0.1044	No
58	Gadd45a	10361	-0.333	-0.0980	No
59	Timp3	10393	-0.337	-0.0852	No
60	Tgm2	10478	-0.345	-0.0764	No
61	Fuca1	10856	-0.388	-0.0892	No
62	Wipf1	11190	-0.435	-0.0964	No
63	Itga2	11253	-0.445	-0.0812	No
64	Tgfbr3	11336	-0.460	-0.0670	No
65	Tpm4	11653	-0.520	-0.0689	No
66	Cap2	12094	-0.662	-0.0744	No
67	Gem	12180	-0.708	-0.0492	No
68	Mmp2	12201	-0.729	-0.0177	No
69	Sgcb	12295	-0.815	0.0118	No