Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group1_versus_Group3.Mast_Pheno.cls #Group1_versus_Group3_repos
Phenotype	Mast_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_COMPLEMENT
Enrichment Score (ES)	-0.24563324
Normalized Enrichment Score (NES)	-1.1085669
Nominal p-value	0.24242425
FDR q-value	0.7179245
FWER p-Value	0.997

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fdx1	146	0.742	0.0133	No
2	Psen1	185	0.719	0.0347	No
3	Gnai3	387	0.605	0.0389	No
4	Il6	411	0.596	0.0572	No
5	Lta4h	434	0.586	0.0753	No
6	Rnf4	524	0.558	0.0871	No
7	Gzmb	616	0.531	0.0977	No
8	Ctsc	716	0.505	0.1068	No
9	Cdk5r1	888	0.463	0.1087	No
10	Dock4	959	0.449	0.1182	No
11	Tnfaip3	983	0.444	0.1314	No
12	Adam9	1036	0.431	0.1418	No
13	Gmfb	1269	0.393	0.1364	No
14	Hspa5	1369	0.377	0.1411	No
15	Rce1	1570	0.349	0.1367	No
16	Usp8	1882	0.312	0.1221	No
17	Dpp4	1896	0.311	0.1316	No
18	Casp7	2304	0.272	0.1078	No
19	Prep	2430	0.260	0.1065	No
20	C3	3008	0.209	0.0668	No
21	Kcnip2	3053	0.205	0.0702	No
22	Ctsl	3156	0.197	0.0686	No
23	Dyrk2	3493	0.168	0.0470	No
24	Casp9	3607	0.159	0.0433	No
25	Akap10	3612	0.159	0.0483	No
26	Raf1	3747	0.149	0.0425	No
27	Ctsd	3767	0.147	0.0459	No
28	Gng2	3866	0.138	0.0427	No
29	Lamp2	3970	0.129	0.0387	No
30	Serpinc1	4016	0.126	0.0393	No
31	Kcnip3	4145	0.116	0.0329	No
32	Cdh13	4179	0.114	0.0341	No
33	Gp1ba	4334	0.105	0.0252	No
34	Kif2a	4338	0.105	0.0285	No
35	Lcp2	4368	0.103	0.0296	No
36	Dgkg	4407	0.100	0.0299	No
37	Cblb	4694	0.078	0.0094	No
38	Psmb9	4995	0.056	-0.0130	No
39	Src	5067	0.052	-0.0170	No
40	Rasgrp1	5112	0.049	-0.0189	No
41	Vcpip1	5301	0.035	-0.0330	No
42	Plaur	5388	0.029	-0.0390	No
43	Rhog	5610	0.015	-0.0564	No
44	Pik3cg	5673	0.012	-0.0610	No
45	S100a13	5679	0.012	-0.0610	No
46	Sirt6	5742	0.008	-0.0658	No
47	Xpnpep1	5796	0.004	-0.0699	No
48	S100a9	5865	0.000	-0.0755	No
49	Brpf3	5896	-0.002	-0.0778	No
50	Zeb1	5918	-0.003	-0.0794	No
51	Dock9	5959	-0.008	-0.0824	No
52	Ehd1	6207	-0.025	-0.1016	No
53	Ctso	6269	-0.029	-0.1055	No
54	Ppp2cb	6292	-0.031	-0.1063	No
55	Pdp1	6390	-0.037	-0.1129	No
56	Was	6405	-0.038	-0.1127	No
57	Ctsb	6468	-0.042	-0.1163	No
58	Pik3ca	6502	-0.044	-0.1175	No
59	Phex	6556	-0.048	-0.1202	No
60	Lap3	6581	-0.050	-0.1204	No
61	Dusp5	6713	-0.059	-0.1291	No
62	Pla2g4a	6861	-0.068	-0.1387	No
63	Usp15	6975	-0.076	-0.1453	No
64	Ppp4c	7075	-0.083	-0.1505	No
65	Plscr1	7173	-0.090	-0.1553	No
66	Fcer1g	7452	-0.107	-0.1742	No
67	Lyn	7631	-0.119	-0.1846	No
68	Prkcd	7814	-0.131	-0.1949	No
69	Rabif	7848	-0.134	-0.1930	No
70	Prdm4	7890	-0.137	-0.1917	No
71	Gnai2	8000	-0.145	-0.1956	No
72	Calm1	8126	-0.154	-0.2005	No
73	Irf1	8213	-0.161	-0.2020	No
74	Prcp	8342	-0.170	-0.2066	No
75	Cr2	8372	-0.173	-0.2031	No
76	Grb2	8397	-0.174	-0.1992	No
77	F8	8451	-0.179	-0.1974	No
78	Irf2	8507	-0.183	-0.1956	No
79	Lipa	8590	-0.190	-0.1958	No
80	Usp14	8685	-0.195	-0.1968	No
81	Cd46	8731	-0.199	-0.1937	No
82	Calm3	8904	-0.211	-0.2005	No
83	Atox1	9174	-0.232	-0.2145	No
84	Car2	9419	-0.251	-0.2258	No
85	Stx4a	9506	-0.258	-0.2240	No
86	Csrp1	9601	-0.266	-0.2226	No
87	Timp2	9747	-0.277	-0.2249	No
88	Itgam	9792	-0.281	-0.2189	No
89	Gpd2	10103	-0.308	-0.2336	No
90	Mmp14	10252	-0.324	-0.2346	Yes
91	Jak2	10357	-0.333	-0.2318	Yes
92	Usp16	10415	-0.339	-0.2249	Yes
93	Casp3	10466	-0.344	-0.2173	Yes
94	Gnb4	10494	-0.347	-0.2077	Yes
95	Irf7	10594	-0.359	-0.2035	Yes
96	Pik3r5	10616	-0.362	-0.1930	Yes
97	Pim1	10632	-0.364	-0.1818	Yes
98	Msrb1	10697	-0.370	-0.1744	Yes
99	Spock2	10837	-0.386	-0.1726	Yes
100	Gca	10847	-0.387	-0.1602	Yes
101	Fyn	10873	-0.390	-0.1490	Yes
102	Casp1	10882	-0.391	-0.1364	Yes
103	Dock10	10931	-0.398	-0.1267	Yes
104	Gngt2	11026	-0.410	-0.1204	Yes
105	Gnb2	11030	-0.411	-0.1067	Yes
106	Dusp6	11186	-0.434	-0.1046	Yes
107	Anxa5	11235	-0.443	-0.0934	Yes
108	Lgals3	11526	-0.492	-0.1002	Yes
109	C2	11534	-0.494	-0.0841	Yes
110	Sh2b3	11663	-0.523	-0.0767	Yes
111	Plek	11765	-0.546	-0.0663	Yes
112	Pfn1	11904	-0.590	-0.0575	Yes
113	Gata3	11929	-0.603	-0.0390	Yes
114	Casp4	12125	-0.675	-0.0319	Yes
115	Cpq	12222	-0.748	-0.0143	Yes
116	Rbsn	12377	-0.941	0.0052	Yes