Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group1_versus_Group3.Mast_Pheno.cls #Group1_versus_Group3_repos
Phenotype	Mast_Pheno.cls#Group1_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.21572016
Normalized Enrichment Score (NES)	-1.0253716
Nominal p-value	0.4194215
FDR q-value	0.8504082
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Jun	36	0.971	0.0273	No
2	Rara	74	0.865	0.0513	No
3	Pdgfrb	102	0.821	0.0747	No
4	Cd44	161	0.734	0.0929	No
5	Psen1	185	0.719	0.1134	No
6	Il6	411	0.596	0.1138	No
7	Tspo	508	0.562	0.1235	No
8	Satb1	849	0.472	0.1106	No
9	Rhob	854	0.471	0.1250	No
10	Cdkn1b	988	0.444	0.1280	No
11	Cd69	1117	0.417	0.1306	No
12	Tnfsf10	1172	0.408	0.1389	No
13	Bcl2l1	1457	0.364	0.1272	No
14	Bmf	1854	0.315	0.1049	No
15	Gsr	1950	0.305	0.1067	No
16	Prf1	2023	0.299	0.1102	No
17	Casp7	2304	0.272	0.0960	No
18	Txnip	2306	0.272	0.1044	No
19	Gpx4	2325	0.270	0.1113	No
20	Isg20	2449	0.259	0.1094	No
21	Cdkn1a	2566	0.248	0.1077	No
22	Pea15a	2634	0.242	0.1099	No
23	Ppt1	2755	0.231	0.1073	No
24	Rock1	2771	0.229	0.1132	No
25	Bcap31	2787	0.228	0.1191	No
26	Gsn	2914	0.216	0.1157	No
27	Ppp2r5b	3080	0.202	0.1086	No
28	App	3124	0.199	0.1113	No
29	Hmgb2	3127	0.199	0.1173	No
30	Ptk2	3180	0.194	0.1191	No
31	Cflar	3403	0.176	0.1066	No
32	Casp9	3607	0.159	0.0951	No
33	Tgfb2	3871	0.138	0.0781	No
34	Gch1	3882	0.136	0.0815	No
35	Bid	3952	0.131	0.0800	No
36	Sptan1	3997	0.127	0.0804	No
37	Mgmt	4081	0.121	0.0774	No
38	Tnf	4222	0.113	0.0696	No
39	Crebbp	4319	0.106	0.0651	No
40	Nefh	4340	0.105	0.0668	No
41	Nedd9	4359	0.103	0.0685	No
42	Bcl2l11	4450	0.097	0.0642	No
43	Wee1	4702	0.078	0.0463	No
44	Bax	4720	0.077	0.0473	No
45	Top2a	4811	0.071	0.0422	No
46	Rela	4945	0.060	0.0333	No
47	Tap1	5057	0.053	0.0259	No
48	Birc3	5140	0.047	0.0208	No
49	Ebp	5414	0.027	-0.0005	No
50	Sod1	5468	0.024	-0.0041	No
51	Psen2	5478	0.023	-0.0041	No
52	Anxa1	5540	0.019	-0.0085	No
53	Ctnnb1	5581	0.017	-0.0112	No
54	Pak1	5582	0.017	-0.0107	No
55	Diablo	5642	0.013	-0.0150	No
56	Sqstm1	5883	-0.000	-0.0345	No
57	Cyld	6055	-0.015	-0.0479	No
58	Rnasel	6290	-0.031	-0.0659	No
59	Brca1	6334	-0.033	-0.0684	No
60	Casp6	6422	-0.039	-0.0742	No
61	Rhot2	6526	-0.046	-0.0811	No
62	Btg3	6594	-0.051	-0.0850	No
63	Btg2	6723	-0.059	-0.0935	No
64	Ddit3	6729	-0.060	-0.0920	No
65	Etf1	6868	-0.069	-0.1011	No
66	H1f0	6995	-0.077	-0.1089	No
67	Dnajc3	7008	-0.078	-0.1075	No
68	Casp8	7097	-0.085	-0.1120	No
69	Mcl1	7238	-0.095	-0.1204	No
70	Igf2r	7360	-0.101	-0.1270	No
71	Ppp3r1	7385	-0.103	-0.1258	No
72	Smad7	7502	-0.110	-0.1317	No
73	Hgf	7627	-0.119	-0.1381	No
74	Dnaja1	7801	-0.130	-0.1481	No
75	Retsat	7936	-0.141	-0.1546	No
76	Lmna	7971	-0.143	-0.1529	No
77	Ifngr1	8154	-0.156	-0.1628	No
78	Irf1	8213	-0.161	-0.1625	No
79	Gna15	8226	-0.162	-0.1584	No
80	Madd	8251	-0.164	-0.1552	No
81	Ank	8398	-0.174	-0.1616	No
82	Dap	8486	-0.182	-0.1630	No
83	Dffa	8522	-0.185	-0.1601	No
84	Pdcd4	8798	-0.204	-0.1761	No
85	Dnm1l	8902	-0.211	-0.1779	No
86	Xiap	8988	-0.216	-0.1780	No
87	Dap3	9151	-0.230	-0.1840	No
88	Casp2	9159	-0.230	-0.1774	No
89	Cdc25b	9522	-0.260	-0.1987	No
90	Sc5d	9733	-0.277	-0.2071	Yes
91	Timp2	9747	-0.277	-0.1995	Yes
92	Il18	9835	-0.285	-0.1977	Yes
93	Add1	9956	-0.296	-0.1982	Yes
94	Sat1	9963	-0.297	-0.1894	Yes
95	Cdk2	10081	-0.306	-0.1894	Yes
96	Gadd45a	10361	-0.333	-0.2016	Yes
97	Timp3	10393	-0.337	-0.1936	Yes
98	Ccnd2	10403	-0.338	-0.1838	Yes
99	Casp3	10466	-0.344	-0.1782	Yes
100	Plcb2	10536	-0.352	-0.1728	Yes
101	Slc20a1	10772	-0.378	-0.1801	Yes
102	Casp1	10882	-0.391	-0.1767	Yes
103	Krt18	10953	-0.401	-0.1699	Yes
104	Bnip3l	10967	-0.403	-0.1584	Yes
105	Bcl2l2	11191	-0.435	-0.1629	Yes
106	Tgfbr3	11336	-0.460	-0.1603	Yes
107	Lgals3	11526	-0.492	-0.1603	Yes
108	Gpx1	11555	-0.498	-0.1470	Yes
109	Ier3	11784	-0.551	-0.1484	Yes
110	Bcl10	11974	-0.621	-0.1443	Yes
111	Ifitm3	12067	-0.656	-0.1314	Yes
112	Casp4	12125	-0.675	-0.1150	Yes
113	F2r	12158	-0.693	-0.0959	Yes
114	Mmp2	12201	-0.729	-0.0766	Yes
115	Fdxr	12208	-0.732	-0.0543	Yes
116	Erbb3	12229	-0.752	-0.0325	Yes
117	Sod2	12261	-0.781	-0.0107	Yes
118	Vdac2	12286	-0.809	0.0126	Yes