Details for gene set HALLMARK_TNFA_SIGNALING_VIA

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group1_versus_Group2.Mast_Pheno.cls #Group1_versus_Group2_repos
Phenotype	Mast_Pheno.cls#Group1_versus_Group2_repos
Upregulated in class	1
GeneSet	HALLMARK_TNFA_SIGNALING_VIA_NFKB
Enrichment Score (ES)	-0.2980734
Normalized Enrichment Score (NES)	-1.1802735
Nominal p-value	0.24596775
FDR q-value	0.6958979
FWER p-Value	0.904

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	B4galt1	214	0.698	0.0051	No
2	Vegfa	366	0.607	0.0124	No
3	Lamb3	462	0.573	0.0232	No
4	Zbtb10	468	0.570	0.0412	No
5	Jun	479	0.566	0.0586	No
6	Cd44	634	0.522	0.0629	No
7	Rhob	1139	0.420	0.0355	No
8	Ptger4	1346	0.389	0.0313	No
9	Pfkfb3	1687	0.344	0.0148	No
10	Btg1	1697	0.344	0.0252	No
11	Zc3h12a	1779	0.335	0.0294	No
12	Dusp1	1792	0.333	0.0391	No
13	Klf6	1838	0.327	0.0460	No
14	Bcl6	1841	0.326	0.0563	No
15	Ccrl2	1924	0.316	0.0599	No
16	Clcf1	2228	0.287	0.0445	No
17	Dusp5	2424	0.269	0.0373	No
18	Pnrc1	2430	0.268	0.0456	No
19	Tubb2a	2457	0.266	0.0520	No
20	Ripk2	2491	0.263	0.0578	No
21	Fut4	2708	0.245	0.0482	No
22	Dram1	3166	0.208	0.0178	No
23	Ier2	3769	0.164	-0.0258	No
24	Dusp2	3783	0.163	-0.0216	No
25	Tnfaip2	3805	0.162	-0.0181	No
26	Dnajb4	3875	0.157	-0.0187	No
27	Bhlhe40	3935	0.151	-0.0186	No
28	Smad3	4088	0.142	-0.0263	No
29	Csf1	4145	0.138	-0.0265	No
30	Ehd1	4303	0.126	-0.0351	No
31	Tap1	4395	0.121	-0.0386	No
32	Nfkbia	4437	0.118	-0.0382	No
33	Rela	4459	0.116	-0.0361	No
34	Fosb	4622	0.106	-0.0459	No
35	Cflar	4674	0.103	-0.0467	No
36	Marcks	5060	0.076	-0.0755	No
37	Mcl1	5079	0.074	-0.0746	No
38	B4galt5	5118	0.073	-0.0753	No
39	Icam1	5130	0.072	-0.0739	No
40	Il6st	5134	0.072	-0.0718	No
41	Litaf	5285	0.062	-0.0820	No
42	Btg2	5323	0.060	-0.0831	No
43	Klf10	5373	0.056	-0.0852	No
44	Nfkb2	5418	0.053	-0.0871	No
45	Fos	5419	0.053	-0.0854	No
46	Nampt	5483	0.048	-0.0890	No
47	Ccnl1	5651	0.036	-0.1014	No
48	Tank	5703	0.033	-0.1045	No
49	Il15ra	5795	0.027	-0.1110	No
50	Kdm6b	5897	0.021	-0.1185	No
51	Slc16a6	6244	-0.001	-0.1465	No
52	Ier3	6276	-0.004	-0.1489	No
53	Dennd5a	6354	-0.009	-0.1549	No
54	Gpr183	6579	-0.024	-0.1723	No
55	Junb	6912	-0.042	-0.1979	No
56	Tnip2	7089	-0.054	-0.2105	No
57	Plaur	7135	-0.057	-0.2123	No
58	Mxd1	7154	-0.058	-0.2119	No
59	Tnf	7183	-0.061	-0.2122	No
60	Birc3	7418	-0.077	-0.2287	No
61	Panx1	7613	-0.090	-0.2416	No
62	Ifih1	7642	-0.092	-0.2409	No
63	Slc2a3	7670	-0.093	-0.2401	No
64	Gch1	7796	-0.100	-0.2470	No
65	Ifngr2	7991	-0.115	-0.2590	No
66	Pmepa1	8134	-0.125	-0.2665	No
67	Ninj1	8136	-0.125	-0.2626	No
68	Cdkn1a	8279	-0.134	-0.2698	No
69	Nfkbie	8365	-0.140	-0.2722	No
70	Gadd45a	8391	-0.142	-0.2697	No
71	Il18	8455	-0.146	-0.2701	No
72	Sqstm1	8461	-0.146	-0.2658	No
73	Tiparp	8506	-0.149	-0.2646	No
74	Snn	8686	-0.161	-0.2739	No
75	Fosl2	8709	-0.163	-0.2704	No
76	Gfpt2	8741	-0.165	-0.2676	No
77	Tsc22d1	8789	-0.170	-0.2660	No
78	Sgk1	8938	-0.181	-0.2722	No
79	Slc2a6	9001	-0.186	-0.2712	No
80	Map2k3	9101	-0.194	-0.2730	No
81	Irf1	9152	-0.197	-0.2707	No
82	Ifit2	9192	-0.200	-0.2674	No
83	Tnfaip8	9223	-0.203	-0.2633	No
84	Egr1	9652	-0.235	-0.2905	Yes
85	Ppp1r15a	9673	-0.237	-0.2845	Yes
86	Atp2b1	9705	-0.239	-0.2793	Yes
87	Klf9	9737	-0.243	-0.2740	Yes
88	Birc2	9793	-0.247	-0.2705	Yes
89	Trip10	9899	-0.254	-0.2709	Yes
90	Il6	9962	-0.260	-0.2675	Yes
91	Pdlim5	9976	-0.261	-0.2601	Yes
92	Rcan1	10095	-0.270	-0.2610	Yes
93	Nr4a2	10124	-0.273	-0.2545	Yes
94	Nfat5	10146	-0.275	-0.2473	Yes
95	Sod2	10227	-0.282	-0.2447	Yes
96	Id2	10328	-0.291	-0.2435	Yes
97	Yrdc	10410	-0.300	-0.2404	Yes
98	Per1	10490	-0.308	-0.2369	Yes
99	Hes1	10517	-0.312	-0.2289	Yes
100	Sphk1	10566	-0.318	-0.2226	Yes
101	Gem	10785	-0.343	-0.2293	Yes
102	Btg3	10951	-0.365	-0.2309	Yes
103	Pde4b	11109	-0.389	-0.2311	Yes
104	Ptpre	11144	-0.394	-0.2212	Yes
105	Myc	11146	-0.395	-0.2085	Yes
106	Ier5	11207	-0.404	-0.2004	Yes
107	Cd69	11223	-0.407	-0.1885	Yes
108	Tnfaip3	11225	-0.407	-0.1755	Yes
109	Nfkb1	11267	-0.413	-0.1655	Yes
110	Tnip1	11275	-0.414	-0.1527	Yes
111	Ldlr	11377	-0.431	-0.1470	Yes
112	Plek	11435	-0.440	-0.1375	Yes
113	Irs2	11444	-0.441	-0.1239	Yes
114	Relb	11466	-0.445	-0.1113	Yes
115	Tgif1	11591	-0.466	-0.1064	Yes
116	Nfe2l2	11610	-0.471	-0.0927	Yes
117	Stat5a	11711	-0.489	-0.0850	Yes
118	Bcl3	11730	-0.493	-0.0706	Yes
119	Eif1	11742	-0.496	-0.0555	Yes
120	Rel	11768	-0.502	-0.0414	Yes
121	Rigi	11858	-0.523	-0.0318	Yes
122	Sat1	11874	-0.526	-0.0160	Yes
123	Abca1	12032	-0.570	-0.0104	Yes
124	Ets2	12189	-0.644	-0.0023	Yes
125	Rnf19b	12273	-0.705	0.0136	Yes