Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	Mast.Mast_Pheno.cls #Group1_versus_Group2.Mast_Pheno.cls #Group1_versus_Group2_repos
Phenotype	Mast_Pheno.cls#Group1_versus_Group2_repos
Upregulated in class	0
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.3288081
Normalized Enrichment Score (NES)	1.255105
Nominal p-value	0.13953489
FDR q-value	0.71623564
FWER p-Value	0.81

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fap	147	0.749	0.0267	Yes
2	Flna	191	0.713	0.0599	Yes
3	Emp3	231	0.688	0.0921	Yes
4	Vegfa	366	0.607	0.1125	Yes
5	Tgfb1	427	0.586	0.1378	Yes
6	Jun	479	0.566	0.1629	Yes
7	Cd44	634	0.522	0.1773	Yes
8	Igfbp4	689	0.510	0.1992	Yes
9	Vcan	737	0.497	0.2209	Yes
10	Mmp14	942	0.454	0.2278	Yes
11	Il15	1042	0.436	0.2422	Yes
12	Rhob	1139	0.420	0.2561	Yes
13	Plod2	1144	0.419	0.2773	Yes
14	Cald1	1223	0.405	0.2919	Yes
15	Ecm1	1273	0.399	0.3084	Yes
16	P3h1	1275	0.398	0.3288	Yes
17	Vegfc	2030	0.306	0.2836	No
18	Pdgfrb	2050	0.305	0.2978	No
19	Ecm2	2396	0.271	0.2838	No
20	Tpm1	2589	0.255	0.2814	No
21	Copa	3219	0.204	0.2411	No
22	Notch2	3293	0.199	0.2454	No
23	Ntm	3300	0.198	0.2551	No
24	Itga2	3401	0.190	0.2568	No
25	Ppib	3650	0.172	0.2456	No
26	Colgalt1	3675	0.170	0.2524	No
27	Itgb3	4234	0.130	0.2140	No
28	Mcm7	4853	0.092	0.1688	No
29	Timp3	4875	0.090	0.1718	No
30	Calu	4968	0.083	0.1686	No
31	Sfrp4	5148	0.071	0.1578	No
32	Gja1	5221	0.066	0.1554	No
33	Lgals1	5568	0.043	0.1296	No
34	Serpine2	6025	0.013	0.0934	No
35	Plod1	6284	-0.005	0.0728	No
36	Pvr	6619	-0.026	0.0471	No
37	Tgfbr3	6633	-0.027	0.0474	No
38	Itgav	6734	-0.032	0.0410	No
39	Bmp1	6751	-0.033	0.0414	No
40	Itgb1	6753	-0.033	0.0430	No
41	Tgm2	6851	-0.038	0.0371	No
42	Plaur	7135	-0.057	0.0171	No
43	Gpc1	7346	-0.072	0.0039	No
44	Itga5	7455	-0.080	-0.0008	No
45	Glipr1	7654	-0.092	-0.0120	No
46	Pmepa1	8134	-0.125	-0.0443	No
47	Vim	8307	-0.135	-0.0512	No
48	Basp1	8376	-0.141	-0.0495	No
49	Gadd45a	8391	-0.142	-0.0433	No
50	Plod3	8423	-0.144	-0.0384	No
51	Lamc1	8795	-0.171	-0.0596	No
52	Qsox1	8803	-0.171	-0.0514	No
53	Thbs1	8887	-0.178	-0.0489	No
54	Dst	9119	-0.195	-0.0575	No
55	Mmp2	9303	-0.208	-0.0616	No
56	Il6	9962	-0.260	-0.1014	No
57	Capg	10142	-0.275	-0.1017	No
58	Col5a1	10144	-0.275	-0.0876	No
59	Id2	10328	-0.291	-0.0874	No
60	Gem	10785	-0.343	-0.1067	No
61	Sntb1	10826	-0.347	-0.0920	No
62	Fbn1	11205	-0.404	-0.1018	No
63	Tnfaip3	11225	-0.407	-0.0824	No
64	Fuca1	11549	-0.459	-0.0849	No
65	Sat1	11874	-0.526	-0.0840	No
66	Cap2	11897	-0.532	-0.0584	No
67	Sgcb	11977	-0.556	-0.0362	No
68	Wipf1	12070	-0.586	-0.0135	No
69	Tpm4	12382	-0.844	0.0048	No