Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MPP.MPP_Pheno.cls#Group6_versus_Group8.MPP_Pheno.cls#Group6_versus_Group8_repos
Phenotype	MPP_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	4
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.3250737
Normalized Enrichment Score (NES)	1.2397407
Nominal p-value	0.10594796
FDR q-value	0.49537456
FWER p-Value	0.879

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fn1	89	0.868	0.0176	Yes
2	Slit2	93	0.861	0.0395	Yes
3	Pdlim4	123	0.815	0.0588	Yes
4	Col4a2	253	0.720	0.0705	Yes
5	Anpep	346	0.656	0.0826	Yes
6	Abi3bp	383	0.640	0.0971	Yes
7	Spock1	424	0.623	0.1109	Yes
8	Plod2	432	0.619	0.1264	Yes
9	Vegfa	572	0.594	0.1344	Yes
10	Ecm2	582	0.594	0.1491	Yes
11	Ecm1	712	0.575	0.1571	Yes
12	Vcan	723	0.570	0.1712	Yes
13	Nid2	740	0.566	0.1848	Yes
14	Gem	860	0.535	0.1924	Yes
15	Vegfc	1051	0.491	0.1951	Yes
16	Pfn2	1204	0.466	0.1992	Yes
17	Fzd8	1266	0.459	0.2078	Yes
18	Mmp14	1273	0.458	0.2192	Yes
19	Spp1	1322	0.451	0.2282	Yes
20	Col12a1	1461	0.438	0.2323	Yes
21	Loxl1	1470	0.438	0.2430	Yes
22	Col4a1	1663	0.427	0.2440	Yes
23	Tagln	1734	0.421	0.2512	Yes
24	Fbln1	1972	0.405	0.2493	Yes
25	Gpc1	2080	0.390	0.2538	Yes
26	Pcolce	2137	0.384	0.2607	Yes
27	Dab2	2179	0.379	0.2683	Yes
28	Tgm2	2209	0.376	0.2764	Yes
29	Col5a3	2222	0.374	0.2853	Yes
30	Cxcl12	2388	0.357	0.2859	Yes
31	Fstl1	2445	0.352	0.2920	Yes
32	Col16a1	2632	0.334	0.2910	Yes
33	Tnfrsf12a	2887	0.313	0.2858	Yes
34	Qsox1	2898	0.312	0.2933	Yes
35	Flna	3002	0.305	0.2958	Yes
36	Dst	3013	0.303	0.3030	Yes
37	Comp	3076	0.301	0.3075	Yes
38	Lama1	3179	0.294	0.3098	Yes
39	Bmp1	3183	0.294	0.3171	Yes
40	Calu	3193	0.293	0.3241	Yes
41	Plaur	3318	0.288	0.3251	Yes
42	Tgfbr3	3535	0.275	0.3210	No
43	Dcn	3706	0.264	0.3189	No
44	Cdh11	4032	0.252	0.3086	No
45	Tfpi2	4434	0.236	0.2939	No
46	Timp3	4699	0.224	0.2860	No
47	Cap2	4994	0.207	0.2762	No
48	Adam12	5014	0.206	0.2805	No
49	P3h1	5127	0.200	0.2798	No
50	Notch2	5205	0.196	0.2808	No
51	Fgf2	5207	0.196	0.2858	No
52	Id2	5486	0.180	0.2760	No
53	Thbs1	5540	0.177	0.2778	No
54	Jun	5804	0.164	0.2684	No
55	Ntm	5859	0.162	0.2698	No
56	Cald1	5920	0.160	0.2708	No
57	Fbn1	5949	0.159	0.2734	No
58	Lamc1	6234	0.144	0.2624	No
59	Mylk	6349	0.139	0.2601	No
60	Postn	6395	0.136	0.2613	No
61	Slit3	6693	0.122	0.2490	No
62	Copa	7147	0.103	0.2283	No
63	Tpm1	7191	0.101	0.2287	No
64	Itga5	7499	0.088	0.2151	No
65	Sfrp1	7548	0.086	0.2148	No
66	Dpysl3	7701	0.081	0.2090	No
67	Slc6a8	7752	0.079	0.2084	No
68	Col5a1	7853	0.075	0.2052	No
69	Glipr1	8111	0.065	0.1936	No
70	Itgb3	8184	0.061	0.1914	No
71	Sparc	8222	0.060	0.1910	No
72	Efemp2	8306	0.057	0.1882	No
73	Lama2	8493	0.051	0.1799	No
74	Gja1	8607	0.046	0.1753	No
75	Fas	8752	0.041	0.1689	No
76	Mmp2	8832	0.038	0.1658	No
77	Plod1	9275	0.020	0.1435	No
78	Thbs2	9651	0.006	0.1243	No
79	Mcm7	9664	0.006	0.1238	No
80	Wipf1	9699	0.005	0.1222	No
81	Tpm4	9829	0.000	0.1155	No
82	Itgb1	10206	-0.001	0.0961	No
83	Fap	10237	-0.002	0.0946	No
84	Gpx7	10280	-0.004	0.0926	No
85	Sntb1	10619	-0.013	0.0755	No
86	Itgav	10661	-0.014	0.0737	No
87	Sat1	10700	-0.016	0.0722	No
88	Col5a2	10753	-0.018	0.0699	No
89	Emp3	10929	-0.025	0.0615	No
90	Edil3	10963	-0.027	0.0605	No
91	Cd44	10970	-0.027	0.0609	No
92	Basp1	11124	-0.033	0.0538	No
93	Sgcb	11822	-0.058	0.0193	No
94	Matn2	12172	-0.073	0.0032	No
95	Col8a2	12232	-0.075	0.0021	No
96	Sfrp4	12261	-0.076	0.0026	No
97	Cadm1	12536	-0.084	-0.0094	No
98	Serpine2	12752	-0.094	-0.0181	No
99	Nt5e	13403	-0.120	-0.0486	No
100	Sgcd	13428	-0.121	-0.0468	No
101	Bgn	13437	-0.121	-0.0441	No
102	Lrp1	13884	-0.141	-0.0635	No
103	Pmepa1	14069	-0.148	-0.0692	No
104	Tgfb1	14198	-0.155	-0.0718	No
105	Vcam1	14488	-0.169	-0.0824	No
106	Pvr	14767	-0.182	-0.0921	No
107	Itga2	14849	-0.187	-0.0916	No
108	Tpm2	14872	-0.188	-0.0879	No
109	Mest	15245	-0.209	-0.1017	No
110	Plod3	15378	-0.215	-0.1030	No
111	Il15	15451	-0.219	-0.1012	No
112	Fuca1	15568	-0.225	-0.1014	No
113	Col1a2	15725	-0.234	-0.1034	No
114	Itgb5	16512	-0.279	-0.1369	No
115	Col11a1	16607	-0.287	-0.1344	No
116	Serpinh1	16739	-0.295	-0.1336	No
117	Rhob	16886	-0.302	-0.1334	No
118	Tgfbi	16945	-0.307	-0.1286	No
119	Sdc1	17129	-0.317	-0.1299	No
120	Col1a1	17339	-0.330	-0.1323	No
121	Tnfaip3	17395	-0.334	-0.1266	No
122	Gadd45b	17546	-0.350	-0.1254	No
123	Capg	17678	-0.359	-0.1230	No
124	Cdh2	18052	-0.399	-0.1320	No
125	Magee1	18130	-0.408	-0.1256	No
126	Lama3	18189	-0.417	-0.1179	No
127	Col7a1	18220	-0.421	-0.1087	No
128	Colgalt1	18247	-0.424	-0.0992	No
129	Pdgfrb	18390	-0.445	-0.0952	No
130	Ppib	18415	-0.449	-0.0849	No
131	Gadd45a	18452	-0.455	-0.0752	No
132	Cdh6	18585	-0.477	-0.0698	No
133	Vim	18669	-0.488	-0.0616	No
134	Lgals1	18973	-0.546	-0.0633	No
135	Thy1	19126	-0.601	-0.0558	No
136	Eno2	19165	-0.619	-0.0419	No
137	Igfbp4	19332	-0.714	-0.0322	No
138	Sdc4	19375	-0.746	-0.0153	No
139	Fstl3	19458	-0.873	0.0028	No