Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MPP.MPP_Pheno.cls#Group3_versus_Group4.MPP_Pheno.cls#Group3_versus_Group4_repos
Phenotype	MPP_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.17895634
Normalized Enrichment Score (NES)	-0.76838094
Nominal p-value	0.9726027
FDR q-value	0.960786
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Lama2	53	0.938	0.0278	Yes
2	Fn1	77	0.900	0.0560	Yes
3	Tnfaip3	347	0.666	0.0638	Yes
4	Dcn	377	0.652	0.0836	Yes
5	Nid2	486	0.610	0.0979	Yes
6	Slc6a8	587	0.578	0.1116	Yes
7	Bgn	771	0.531	0.1195	Yes
8	Anpep	1042	0.477	0.1211	Yes
9	Pfn2	1282	0.439	0.1230	Yes
10	Fuca1	1379	0.429	0.1321	Yes
11	Lgals1	1382	0.429	0.1459	Yes
12	Gpc1	1545	0.410	0.1510	Yes
13	Fbln1	1572	0.407	0.1629	Yes
14	Cadm1	1721	0.390	0.1680	Yes
15	Serpine2	2038	0.361	0.1634	Yes
16	Sntb1	2132	0.353	0.1701	Yes
17	Tgfbr3	2312	0.337	0.1718	Yes
18	Itgb5	2404	0.328	0.1778	Yes
19	Fas	2646	0.313	0.1756	Yes
20	Calu	2916	0.291	0.1712	Yes
21	Fgf2	2961	0.289	0.1784	Yes
22	Magee1	3355	0.265	0.1667	No
23	Adam12	3394	0.262	0.1733	No
24	Eno2	3638	0.250	0.1689	No
25	Id2	3660	0.249	0.1759	No
26	Vcam1	3840	0.238	0.1744	No
27	Qsox1	3975	0.230	0.1750	No
28	Gadd45a	4446	0.207	0.1575	No
29	Loxl1	4476	0.206	0.1627	No
30	Sgcd	4708	0.193	0.1571	No
31	Plod2	4754	0.190	0.1610	No
32	Gem	4773	0.189	0.1662	No
33	Lama1	4937	0.180	0.1637	No
34	P3h1	5090	0.173	0.1615	No
35	Matn2	5158	0.169	0.1635	No
36	Col11a1	5649	0.148	0.1431	No
37	Notch2	5707	0.148	0.1450	No
38	Plaur	5772	0.145	0.1464	No
39	Colgalt1	5951	0.137	0.1417	No
40	Tpm4	6014	0.134	0.1428	No
41	Itgb1	6099	0.131	0.1428	No
42	Cap2	6204	0.125	0.1415	No
43	Flna	6240	0.124	0.1437	No
44	Tagln	6324	0.120	0.1433	No
45	Cdh6	6754	0.103	0.1245	No
46	Thbs2	6847	0.099	0.1230	No
47	Lrp1	7021	0.093	0.1171	No
48	Itgav	7104	0.090	0.1158	No
49	Ntm	7366	0.080	0.1050	No
50	Col16a1	7677	0.071	0.0913	No
51	Copa	7719	0.069	0.0914	No
52	Fzd8	7781	0.066	0.0904	No
53	Vim	7817	0.065	0.0907	No
54	Mmp2	7818	0.065	0.0929	No
55	Spp1	7921	0.061	0.0896	No
56	Tpm2	7947	0.060	0.0903	No
57	Slit2	8207	0.051	0.0785	No
58	Nt5e	8220	0.051	0.0796	No
59	Cd44	8439	0.042	0.0697	No
60	Pvr	8450	0.041	0.0705	No
61	Tgfb1	8581	0.037	0.0650	No
62	Lamc1	8630	0.035	0.0637	No
63	Ppib	8884	0.026	0.0514	No
64	Ecm2	8940	0.024	0.0494	No
65	Fstl3	8941	0.024	0.0502	No
66	Ecm1	8947	0.024	0.0507	No
67	Plod3	9102	0.019	0.0433	No
68	Timp3	9248	0.013	0.0363	No
69	Jun	9351	0.010	0.0313	No
70	Abi3bp	9395	0.009	0.0294	No
71	Thy1	9666	0.001	0.0155	No
72	Col5a2	9698	0.000	0.0139	No
73	Cxcl12	9715	0.000	0.0131	No
74	Dpysl3	9973	-0.007	0.0000	No
75	Tpm1	10124	-0.012	-0.0073	No
76	Pmepa1	10358	-0.020	-0.0187	No
77	Fbn1	10456	-0.024	-0.0229	No
78	Gpx7	10660	-0.031	-0.0324	No
79	Itga5	10692	-0.032	-0.0329	No
80	Vegfc	10758	-0.035	-0.0351	No
81	Col5a3	10771	-0.035	-0.0346	No
82	Mmp14	10823	-0.037	-0.0360	No
83	Lama3	10859	-0.038	-0.0366	No
84	Gja1	11171	-0.050	-0.0510	No
85	Mylk	11185	-0.050	-0.0501	No
86	Efemp2	11671	-0.066	-0.0729	No
87	Fap	11794	-0.069	-0.0770	No
88	Col7a1	11874	-0.072	-0.0787	No
89	Gadd45b	11976	-0.075	-0.0815	No
90	Serpinh1	12351	-0.088	-0.0979	No
91	Pcolce	12390	-0.090	-0.0969	No
92	Pdlim4	12641	-0.098	-0.1067	No
93	Fstl1	12650	-0.098	-0.1039	No
94	Pdgfrb	12807	-0.104	-0.1086	No
95	Emp3	12930	-0.109	-0.1113	No
96	Il15	13079	-0.115	-0.1152	No
97	Igfbp4	13171	-0.118	-0.1161	No
98	Vegfa	13218	-0.120	-0.1145	No
99	Bmp1	13378	-0.126	-0.1186	No
100	Sfrp1	13474	-0.130	-0.1193	No
101	Wipf1	13634	-0.136	-0.1231	No
102	Cald1	13650	-0.137	-0.1194	No
103	Col4a1	13940	-0.146	-0.1295	No
104	Cdh2	14084	-0.152	-0.1320	No
105	Dab2	14250	-0.159	-0.1353	No
106	Dst	14734	-0.179	-0.1544	No
107	Edil3	14882	-0.183	-0.1560	No
108	Col1a1	15044	-0.189	-0.1582	No
109	Sdc1	15060	-0.190	-0.1528	No
110	Mcm7	15153	-0.194	-0.1512	No
111	Basp1	15495	-0.212	-0.1619	No
112	Tfpi2	15526	-0.213	-0.1565	No
113	Tnfrsf12a	15745	-0.224	-0.1604	No
114	Sdc4	15998	-0.239	-0.1657	No
115	Col8a2	16209	-0.250	-0.1683	No
116	Sgcb	16352	-0.258	-0.1673	No
117	Sat1	16378	-0.260	-0.1601	No
118	Itga2	16535	-0.270	-0.1593	No
119	Col5a1	16718	-0.281	-0.1595	No
120	Plod1	17095	-0.306	-0.1690	No
121	Col12a1	17099	-0.306	-0.1592	No
122	Glipr1	17107	-0.307	-0.1495	No
123	Itgb3	17113	-0.307	-0.1398	No
124	Spock1	17290	-0.318	-0.1385	No
125	Col1a2	17645	-0.352	-0.1453	No
126	Capg	17768	-0.362	-0.1398	No
127	Cdh11	17786	-0.364	-0.1288	No
128	Postn	17916	-0.377	-0.1232	No
129	Rhob	17970	-0.383	-0.1134	No
130	Slit3	18031	-0.390	-0.1038	No
131	Sfrp4	18037	-0.391	-0.0914	No
132	Thbs1	18262	-0.412	-0.0895	No
133	Sparc	18802	-0.493	-0.1012	No
134	Tgfbi	19066	-0.552	-0.0968	No
135	Col4a2	19077	-0.556	-0.0792	No
136	Tgm2	19313	-0.670	-0.0695	No
137	Comp	19322	-0.676	-0.0479	No
138	Mest	19412	-0.747	-0.0282	No
139	Vcan	19498	-1.021	0.0007	No