Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MPP.MPP_Pheno.cls#Group2_versus_Group4.MPP_Pheno.cls#Group2_versus_Group4_repos
Phenotype	MPP_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.22051422
Normalized Enrichment Score (NES)	0.90971965
Nominal p-value	0.65317917
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Copa	602	0.572	-0.0133	Yes
2	Tnfaip3	781	0.533	-0.0059	Yes
3	Slc6a8	835	0.525	0.0077	Yes
4	Efemp2	907	0.510	0.0200	Yes
5	Jun	963	0.503	0.0328	Yes
6	Col4a1	1060	0.487	0.0430	Yes
7	Fn1	1090	0.484	0.0565	Yes
8	Sfrp1	1138	0.476	0.0689	Yes
9	Pfn2	1174	0.470	0.0817	Yes
10	Lrp1	1468	0.433	0.0801	Yes
11	Adam12	1475	0.431	0.0932	Yes
12	Tgfbr3	1610	0.416	0.0992	Yes
13	Tpm4	1627	0.414	0.1113	Yes
14	Vcam1	1741	0.403	0.1180	Yes
15	Gja1	1782	0.399	0.1283	Yes
16	Col5a2	1813	0.396	0.1391	Yes
17	Fbln1	1826	0.395	0.1508	Yes
18	Itgb1	2048	0.372	0.1509	Yes
19	Calu	2115	0.363	0.1588	Yes
20	Magee1	2200	0.357	0.1656	Yes
21	Itgav	2434	0.338	0.1641	Yes
22	Sparc	2479	0.335	0.1722	Yes
23	Id2	2550	0.330	0.1789	Yes
24	Thbs2	2597	0.326	0.1867	Yes
25	Dst	2658	0.322	0.1936	Yes
26	Tgfbi	2804	0.311	0.1958	Yes
27	Lama2	2957	0.301	0.1973	Yes
28	Plod2	2978	0.301	0.2056	Yes
29	Qsox1	2999	0.300	0.2139	Yes
30	Plaur	3051	0.297	0.2205	Yes
31	Dcn	3341	0.278	0.2142	No
32	Nid2	4028	0.238	0.1862	No
33	Lama1	4162	0.229	0.1865	No
34	Mmp2	4287	0.222	0.1870	No
35	Fas	4319	0.220	0.1923	No
36	Mcm7	4783	0.198	0.1745	No
37	Flna	4907	0.192	0.1742	No
38	Ppib	5480	0.163	0.1497	No
39	Col8a2	5528	0.161	0.1523	No
40	Loxl1	5656	0.155	0.1506	No
41	Lamc1	5809	0.148	0.1473	No
42	Serpine2	5984	0.139	0.1427	No
43	Thy1	6023	0.137	0.1450	No
44	Fuca1	6086	0.134	0.1460	No
45	Ntm	6244	0.127	0.1418	No
46	Lgals1	6296	0.125	0.1431	No
47	Col11a1	6365	0.122	0.1434	No
48	Itga5	6416	0.122	0.1446	No
49	Cald1	6443	0.120	0.1470	No
50	Sntb1	6698	0.109	0.1372	No
51	Nt5e	6887	0.099	0.1306	No
52	Sdc1	7084	0.090	0.1233	No
53	Cadm1	7294	0.082	0.1151	No
54	Sdc4	7430	0.077	0.1105	No
55	Tnfrsf12a	7527	0.074	0.1079	No
56	Bgn	7659	0.069	0.1033	No
57	Col5a3	7676	0.068	0.1046	No
58	Col16a1	7713	0.067	0.1048	No
59	Gadd45a	7891	0.060	0.0975	No
60	Mylk	7920	0.058	0.0979	No
61	Itgb3	8047	0.053	0.0930	No
62	Abi3bp	8075	0.052	0.0932	No
63	Ecm2	8132	0.050	0.0919	No
64	Eno2	8150	0.049	0.0925	No
65	Notch2	8243	0.045	0.0892	No
66	Lama3	8297	0.043	0.0878	No
67	Fbn1	8607	0.030	0.0728	No
68	Plod3	8771	0.024	0.0651	No
69	Cdh6	8905	0.018	0.0588	No
70	Itgb5	9228	0.007	0.0424	No
71	Fstl1	9236	0.007	0.0423	No
72	Cxcl12	9445	0.000	0.0315	No
73	Slit3	9720	-0.009	0.0177	No
74	Tgm2	9755	-0.010	0.0162	No
75	Fgf2	10082	-0.023	0.0001	No
76	Tpm2	10128	-0.025	-0.0014	No
77	Gpc1	10397	-0.037	-0.0141	No
78	Mmp14	10403	-0.037	-0.0132	No
79	Vim	10510	-0.041	-0.0174	No
80	Plod1	10737	-0.049	-0.0275	No
81	Tpm1	10849	-0.054	-0.0316	No
82	Gpx7	10935	-0.057	-0.0342	No
83	Ecm1	10989	-0.059	-0.0351	No
84	Anpep	11008	-0.060	-0.0341	No
85	Sgcd	11057	-0.062	-0.0347	No
86	Col5a1	11140	-0.066	-0.0369	No
87	Slit2	11443	-0.077	-0.0501	No
88	Pmepa1	11737	-0.090	-0.0624	No
89	Matn2	11859	-0.096	-0.0656	No
90	Sat1	12161	-0.109	-0.0778	No
91	Col1a1	12334	-0.116	-0.0831	No
92	Basp1	12500	-0.122	-0.0878	No
93	Fap	12668	-0.127	-0.0925	No
94	Rhob	12685	-0.128	-0.0893	No
95	Pvr	12822	-0.133	-0.0922	No
96	Vegfa	13223	-0.151	-0.1081	No
97	Igfbp4	13439	-0.162	-0.1142	No
98	Thbs1	13449	-0.163	-0.1096	No
99	Vegfc	13552	-0.167	-0.1097	No
100	Fzd8	13878	-0.181	-0.1208	No
101	Dab2	13934	-0.184	-0.1179	No
102	Cdh2	14183	-0.196	-0.1247	No
103	Cd44	14250	-0.199	-0.1219	No
104	Mest	14363	-0.204	-0.1213	No
105	Col4a2	14579	-0.215	-0.1257	No
106	Wipf1	14757	-0.223	-0.1279	No
107	Edil3	14895	-0.231	-0.1278	No
108	Serpinh1	14907	-0.232	-0.1212	No
109	Bmp1	14909	-0.232	-0.1140	No
110	Timp3	14954	-0.234	-0.1090	No
111	Sgcb	15011	-0.237	-0.1045	No
112	Vcan	15051	-0.240	-0.0991	No
113	Spp1	15092	-0.242	-0.0936	No
114	Pdlim4	15108	-0.242	-0.0869	No
115	Gem	15191	-0.246	-0.0834	No
116	Colgalt1	15445	-0.260	-0.0884	No
117	Col1a2	15646	-0.271	-0.0903	No
118	Tfpi2	16084	-0.297	-0.1036	No
119	Tagln	16180	-0.301	-0.0991	No
120	Tgfb1	16282	-0.307	-0.0948	No
121	Dpysl3	16336	-0.311	-0.0878	No
122	Sfrp4	16342	-0.311	-0.0784	No
123	Emp3	16377	-0.314	-0.0704	No
124	Pdgfrb	16728	-0.335	-0.0780	No
125	Fstl3	16899	-0.348	-0.0760	No
126	Il15	16988	-0.354	-0.0695	No
127	P3h1	17184	-0.368	-0.0681	No
128	Pcolce	17463	-0.390	-0.0703	No
129	Col7a1	17816	-0.423	-0.0754	No
130	Gadd45b	17861	-0.428	-0.0643	No
131	Capg	17995	-0.442	-0.0574	No
132	Postn	18109	-0.454	-0.0491	No
133	Spock1	18135	-0.456	-0.0362	No
134	Cdh11	18207	-0.465	-0.0254	No
135	Cap2	18453	-0.501	-0.0225	No
136	Comp	18501	-0.508	-0.0091	No
137	Col12a1	18629	-0.528	0.0008	No
138	Itga2	18846	-0.570	0.0073	No
139	Glipr1	19413	-0.867	0.0051	No