Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	MPP.MPP_Pheno.cls#Group2_versus_Group4.MPP_Pheno.cls#Group2_versus_Group4_repos
Phenotype	MPP_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_COMPLEMENT
Enrichment Score (ES)	0.18945505
Normalized Enrichment Score (NES)	0.887169
Nominal p-value	0.7134503
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Lgmn	208	0.726	0.0091	Yes
2	Ppp2cb	248	0.697	0.0262	Yes
3	Gp1ba	372	0.639	0.0373	Yes
4	Cda	403	0.627	0.0529	Yes
5	Tnfaip3	781	0.533	0.0481	Yes
6	Hspa1a	869	0.519	0.0578	Yes
7	L3mbtl4	1025	0.492	0.0632	Yes
8	Fn1	1090	0.484	0.0731	Yes
9	Lap3	1100	0.482	0.0859	Yes
10	Gmfb	1205	0.465	0.0932	Yes
11	F10	1243	0.461	0.1039	Yes
12	C3	1279	0.457	0.1146	Yes
13	Lrp1	1468	0.433	0.1168	Yes
14	Gzmk	1543	0.424	0.1246	Yes
15	Irf1	1590	0.418	0.1336	Yes
16	C1qa	1643	0.412	0.1422	Yes
17	Calm3	1909	0.388	0.1392	Yes
18	Adam9	2023	0.374	0.1436	Yes
19	Fyn	2089	0.367	0.1503	Yes
20	Hspa5	2230	0.355	0.1527	Yes
21	Prep	2323	0.346	0.1575	Yes
22	Pclo	2350	0.344	0.1655	Yes
23	Dyrk2	2627	0.324	0.1602	Yes
24	Rnf4	2630	0.324	0.1689	Yes
25	Usp8	2708	0.318	0.1737	Yes
26	Ppp4c	2920	0.304	0.1711	Yes
27	Ctsd	2987	0.300	0.1759	Yes
28	Plaur	3051	0.297	0.1808	Yes
29	Lamp2	3065	0.296	0.1882	Yes
30	Zfpm2	3194	0.287	0.1895	Yes
31	Gnai3	3622	0.262	0.1746	No
32	Rhog	3648	0.261	0.1804	No
33	Dock9	3861	0.247	0.1762	No
34	Spock2	4303	0.221	0.1595	No
35	Phex	4322	0.220	0.1646	No
36	Casp4	4671	0.205	0.1522	No
37	Cdk5r1	4760	0.200	0.1531	No
38	Ctsc	4886	0.193	0.1520	No
39	Dock4	4959	0.189	0.1534	No
40	Olr1	5049	0.186	0.1539	No
41	Usp14	5260	0.175	0.1479	No
42	Maff	5416	0.167	0.1444	No
43	Raf1	5455	0.165	0.1470	No
44	Scg3	5525	0.161	0.1478	No
45	Rce1	5713	0.153	0.1423	No
46	Fcer1g	5814	0.148	0.1412	No
47	Grb2	5848	0.146	0.1435	No
48	Vcpip1	6075	0.135	0.1355	No
49	Psen1	6095	0.134	0.1382	No
50	Sh2b3	6659	0.111	0.1122	No
51	Pdp1	6724	0.107	0.1118	No
52	Pla2g4a	6726	0.107	0.1147	No
53	Gngt2	6921	0.098	0.1073	No
54	Pim1	6954	0.096	0.1083	No
55	Kynu	6960	0.096	0.1107	No
56	Mmp15	6965	0.095	0.1131	No
57	Cd36	7243	0.084	0.1010	No
58	Sirt6	7269	0.083	0.1020	No
59	Actn2	7324	0.080	0.1014	No
60	Dusp6	7477	0.076	0.0957	No
61	Prkcd	7688	0.068	0.0867	No
62	S100a13	7931	0.058	0.0757	No
63	Plscr1	7964	0.056	0.0756	No
64	Lta4h	8066	0.052	0.0718	No
65	Itgam	8138	0.050	0.0695	No
66	Fdx1	8162	0.049	0.0697	No
67	Cp	8292	0.043	0.0642	No
68	Me1	8389	0.040	0.0603	No
69	Jak2	8599	0.030	0.0504	No
70	Cfb	8636	0.029	0.0493	No
71	Gata3	8745	0.025	0.0444	No
72	S100a9	8889	0.018	0.0375	No
73	Ctsb	9092	0.012	0.0274	No
74	Atox1	9200	0.008	0.0221	No
75	Kif2a	9252	0.007	0.0196	No
76	Dpp4	9316	0.004	0.0165	No
77	C9	9407	0.000	0.0119	No
78	Gng2	9731	-0.010	-0.0046	No
79	Gca	10261	-0.031	-0.0311	No
80	Mmp14	10403	-0.037	-0.0373	No
81	F5	10601	-0.044	-0.0463	No
82	Usp15	10686	-0.047	-0.0494	No
83	Akap10	10921	-0.057	-0.0599	No
84	Pik3ca	11044	-0.062	-0.0645	No
85	Cebpb	11144	-0.066	-0.0678	No
86	Ctso	11197	-0.068	-0.0686	No
87	Csrp1	11278	-0.070	-0.0708	No
88	Usp16	11318	-0.072	-0.0709	No
89	Rbsn	11406	-0.075	-0.0733	No
90	Gp9	11436	-0.077	-0.0727	No
91	Ctss	11800	-0.093	-0.0889	No
92	Cr2	11853	-0.096	-0.0890	No
93	Prss36	11942	-0.099	-0.0908	No
94	Cblb	12047	-0.104	-0.0934	No
95	Was	12098	-0.106	-0.0931	No
96	Stx4a	12175	-0.109	-0.0940	No
97	Gnai2	12245	-0.112	-0.0945	No
98	Lgals3	12438	-0.120	-0.1012	No
99	Ehd1	12643	-0.126	-0.1082	No
100	Timp2	12674	-0.127	-0.1063	No
101	Lipa	12696	-0.128	-0.1039	No
102	Gpd2	12759	-0.131	-0.1035	No
103	Hnf4a	12817	-0.133	-0.1028	No
104	Zeb1	13068	-0.144	-0.1118	No
105	Lcp2	13096	-0.145	-0.1092	No
106	Casp3	13176	-0.149	-0.1092	No
107	Irf2	13301	-0.155	-0.1113	No
108	Cpq	13303	-0.155	-0.1071	No
109	Pik3r5	13383	-0.160	-0.1068	No
110	Dock10	13412	-0.161	-0.1039	No
111	Xpnpep1	13477	-0.164	-0.1027	No
112	Cd46	13568	-0.167	-0.1028	No
113	Casp9	13609	-0.170	-0.1002	No
114	C1qc	13679	-0.172	-0.0990	No
115	Ltf	13847	-0.180	-0.1027	No
116	Psmb9	13957	-0.185	-0.1033	No
117	Ctsl	14410	-0.206	-0.1210	No
118	Col4a2	14579	-0.215	-0.1238	No
119	Plek	14825	-0.227	-0.1302	No
120	Lyn	14874	-0.230	-0.1264	No
121	Src	15076	-0.241	-0.1302	No
122	Cpm	15432	-0.260	-0.1414	No
123	Casp7	15597	-0.269	-0.1426	No
124	Gnb4	15797	-0.281	-0.1452	No
125	Calm1	15808	-0.282	-0.1380	No
126	Casp1	15854	-0.285	-0.1325	No
127	Serpinc1	15973	-0.292	-0.1306	No
128	Tfpi2	16084	-0.297	-0.1282	No
129	Dgkh	16093	-0.298	-0.1204	No
130	Irf7	16223	-0.303	-0.1188	No
131	Ctsh	16228	-0.304	-0.1107	No
132	Ccl5	16319	-0.310	-0.1068	No
133	Clu	16348	-0.311	-0.0998	No
134	Anxa5	16395	-0.314	-0.0935	No
135	Kcnip3	16513	-0.321	-0.0908	No
136	Prdm4	16813	-0.341	-0.0969	No
137	Prcp	16852	-0.344	-0.0894	No
138	Ang	17096	-0.361	-0.0921	No
139	Kcnip2	17117	-0.363	-0.0832	No
140	Car2	17138	-0.364	-0.0743	No
141	Pik3cg	17288	-0.375	-0.0717	No
142	Gnb2	17297	-0.376	-0.0618	No
143	Lck	17337	-0.379	-0.0535	No
144	F8	17405	-0.385	-0.0464	No
145	Cdh13	17437	-0.387	-0.0374	No
146	Dusp5	17602	-0.403	-0.0349	No
147	Pdgfb	17897	-0.432	-0.0382	No
148	Brpf3	17985	-0.441	-0.0307	No
149	Notch4	18013	-0.443	-0.0199	No
150	C2	18243	-0.470	-0.0189	No
151	Klkb1	18273	-0.473	-0.0074	No
152	Pfn1	18299	-0.477	0.0043	No
153	Rabif	18395	-0.491	0.0129	No
154	Msrb1	18448	-0.500	0.0239	No
155	Serpinb2	18638	-0.530	0.0286	No
156	Dgkg	18975	-0.603	0.0277	No