Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	MPP.MPP_Pheno.cls#Group2_versus_Group3.MPP_Pheno.cls#Group2_versus_Group3_repos
Phenotype	MPP_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	2
GeneSet	HALLMARK_HYPOXIA
Enrichment Score (ES)	-0.23466419
Normalized Enrichment Score (NES)	-1.0983914
Nominal p-value	0.26122448
FDR q-value	1.0
FWER p-Value	0.978

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Fos	154	0.699	0.0084	No
2	Angptl4	191	0.671	0.0222	No
3	Bhlhe40	304	0.614	0.0308	No
4	Gpc3	364	0.592	0.0416	No
5	Tgfbi	475	0.561	0.0490	No
6	Vhl	513	0.549	0.0600	No
7	Vldlr	572	0.535	0.0695	No
8	Pim1	677	0.508	0.0760	No
9	Ankzf1	784	0.484	0.0818	No
10	Pgk1	794	0.481	0.0926	No
11	Jun	923	0.462	0.0968	No
12	Map3k1	950	0.457	0.1062	No
13	Tgm2	1071	0.442	0.1103	No
14	Ccng2	1379	0.404	0.1039	No
15	Zfp36	1435	0.397	0.1103	No
16	Gpi1	1475	0.393	0.1175	No
17	Col5a1	1508	0.391	0.1250	No
18	Akap12	1529	0.389	0.1331	No
19	Klf6	1657	0.377	0.1353	No
20	Ppp1r15a	1660	0.376	0.1440	No
21	Ets1	1730	0.369	0.1491	No
22	Hdlbp	1795	0.363	0.1543	No
23	Sdc4	1904	0.355	0.1570	No
24	Dusp1	1985	0.349	0.1610	No
25	Ddit3	2183	0.335	0.1587	No
26	Aldoc	2278	0.327	0.1614	No
27	Sap30	2288	0.326	0.1686	No
28	Ppargc1a	2468	0.314	0.1667	No
29	Eno3	2491	0.312	0.1728	No
30	Car12	2546	0.309	0.1773	No
31	Noct	2799	0.292	0.1711	No
32	Cp	2827	0.290	0.1765	No
33	Pfkfb3	2846	0.288	0.1823	No
34	Tgfb3	2927	0.283	0.1848	No
35	Grhpr	3199	0.265	0.1770	No
36	P4ha2	3331	0.255	0.1762	No
37	Mt1	3555	0.243	0.1703	No
38	Nr3c1	3651	0.237	0.1710	No
39	Myh9	3658	0.237	0.1762	No
40	Efna1	3703	0.235	0.1794	No
41	Cdkn1b	3711	0.234	0.1845	No
42	Hspa5	3784	0.230	0.1862	No
43	Cdkn1a	4008	0.219	0.1798	No
44	Btg1	4483	0.195	0.1599	No
45	Gapdhs	4731	0.183	0.1514	No
46	Stbd1	4826	0.178	0.1507	No
47	Jmjd6	4892	0.175	0.1514	No
48	Csrp2	4926	0.174	0.1538	No
49	Slc2a5	4951	0.173	0.1566	No
50	Anxa2	5007	0.170	0.1577	No
51	Phkg1	5033	0.169	0.1604	No
52	Hk2	5062	0.167	0.1629	No
53	Pfkp	5180	0.162	0.1606	No
54	Siah2	5344	0.153	0.1557	No
55	Plin2	5396	0.150	0.1566	No
56	Ugp2	5398	0.150	0.1601	No
57	S100a4	5517	0.145	0.1574	No
58	Pam	5617	0.140	0.1555	No
59	Plaur	5748	0.135	0.1520	No
60	Pfkl	5890	0.129	0.1477	No
61	Klhl24	5968	0.125	0.1466	No
62	Ero1a	6013	0.123	0.1473	No
63	Gpc4	6448	0.106	0.1273	No
64	Kif5a	6455	0.105	0.1295	No
65	Foxo3	6643	0.098	0.1221	No
66	Atf3	6651	0.098	0.1240	No
67	Prkca	6825	0.090	0.1172	No
68	Maff	6965	0.085	0.1119	No
69	Kdm3a	7045	0.082	0.1098	No
70	Hmox1	7062	0.081	0.1108	No
71	Hk1	7271	0.074	0.1018	No
72	Irs2	7314	0.072	0.1013	No
73	Pdk1	7328	0.072	0.1023	No
74	Rbpj	7478	0.067	0.0962	No
75	Chst2	7497	0.066	0.0968	No
76	Zfp292	7549	0.064	0.0957	No
77	Tpd52	7594	0.062	0.0949	No
78	Ids	7794	0.055	0.0859	No
79	Ier3	7906	0.050	0.0813	No
80	Gck	7982	0.048	0.0785	No
81	Pgm1	7988	0.047	0.0794	No
82	Wsb1	8318	0.034	0.0632	No
83	Ndst1	8432	0.030	0.0581	No
84	Ldha	8434	0.030	0.0587	No
85	Casp6	8510	0.027	0.0555	No
86	Scarb1	8608	0.023	0.0510	No
87	Tes	8720	0.019	0.0457	No
88	Fosl2	8843	0.015	0.0398	No
89	Large1	9417	-0.004	0.0102	No
90	Tnfaip3	9446	-0.005	0.0089	No
91	Mxi1	9498	-0.007	0.0064	No
92	Galk1	9909	-0.021	-0.0142	No
93	Bnip3l	10111	-0.029	-0.0240	No
94	Dtna	10113	-0.029	-0.0233	No
95	Klf7	10228	-0.033	-0.0285	No
96	Gbe1	10264	-0.035	-0.0294	No
97	Cavin1	10385	-0.040	-0.0347	No
98	Tiparp	10400	-0.041	-0.0345	No
99	Kdelr3	10450	-0.042	-0.0360	No
100	Aldoa	10628	-0.048	-0.0441	No
101	Slc6a6	10629	-0.048	-0.0429	No
102	Plac8	11331	-0.074	-0.0774	No
103	Atp7a	11411	-0.077	-0.0797	No
104	Rora	11444	-0.078	-0.0796	No
105	Tpi1	11843	-0.094	-0.0979	No
106	Slc2a1	11956	-0.098	-0.1014	No
107	Pdk3	11994	-0.100	-0.1010	No
108	Vegfa	12131	-0.105	-0.1056	No
109	Cxcr4	12238	-0.109	-0.1085	No
110	Glrx	12473	-0.119	-0.1178	No
111	Xpnpep1	12482	-0.120	-0.1154	No
112	Ndst2	12805	-0.133	-0.1290	No
113	Nedd4l	13112	-0.145	-0.1414	No
114	Nagk	13116	-0.145	-0.1382	No
115	Slc37a4	13181	-0.148	-0.1380	No
116	Tmem45a	13195	-0.148	-0.1352	No
117	Ddit4	13242	-0.149	-0.1341	No
118	Nfil3	13328	-0.154	-0.1349	No
119	Sdc2	13398	-0.157	-0.1348	No
120	Gaa	13594	-0.165	-0.1410	No
121	Sdc3	14053	-0.185	-0.1604	No
122	Gcnt2	14131	-0.189	-0.1599	No
123	Errfi1	14256	-0.194	-0.1618	No
124	Rragd	14339	-0.197	-0.1614	No
125	Tpbg	14362	-0.199	-0.1579	No
126	Ampd3	14371	-0.199	-0.1537	No
127	Eno2	14611	-0.211	-0.1611	No
128	Slc25a1	14661	-0.214	-0.1586	No
129	Hexa	14801	-0.220	-0.1607	No
130	Ext1	15114	-0.235	-0.1713	No
131	Inha	15230	-0.242	-0.1716	No
132	Cav1	15335	-0.248	-0.1711	No
133	Mif	15409	-0.251	-0.1691	No
134	Ak4	16060	-0.286	-0.1959	No
135	Sult2b1	16605	-0.323	-0.2165	No
136	Stc2	16957	-0.348	-0.2265	Yes
137	Ndrg1	17084	-0.356	-0.2247	Yes
138	Ppfia4	17153	-0.361	-0.2198	Yes
139	Prdx5	17220	-0.366	-0.2146	Yes
140	B3galt6	17231	-0.366	-0.2066	Yes
141	Pnrc1	17318	-0.373	-0.2023	Yes
142	Cavin3	17479	-0.388	-0.2015	Yes
143	Fam162a	17586	-0.401	-0.1976	Yes
144	Tpst2	17592	-0.401	-0.1885	Yes
145	Slc2a3	17789	-0.419	-0.1888	Yes
146	P4ha1	17866	-0.429	-0.1827	Yes
147	Gpc1	18000	-0.444	-0.1792	Yes
148	Adora2b	18025	-0.447	-0.1700	Yes
149	Eno1b	18152	-0.462	-0.1657	Yes
150	Gys1	18210	-0.469	-0.1576	Yes
151	Bcl2	18258	-0.475	-0.1489	Yes
152	Bgn	18293	-0.479	-0.1395	Yes
153	Pygm	18328	-0.483	-0.1300	Yes
154	Selenbp1	18549	-0.515	-0.1293	Yes
155	Fbp1	18585	-0.521	-0.1189	Yes
156	Dcn	18612	-0.526	-0.1079	Yes
157	Pgm2	18646	-0.533	-0.0972	Yes
158	Lxn	18660	-0.535	-0.0853	Yes
159	Cited2	18785	-0.557	-0.0787	Yes
160	B4galnt2	18940	-0.593	-0.0728	Yes
161	Hs3st1	18948	-0.596	-0.0592	Yes
162	Isg20	19019	-0.613	-0.0485	Yes
163	Pklr	19067	-0.629	-0.0362	Yes
164	Cdkn1c	19179	-0.679	-0.0261	Yes
165	Ilvbl	19260	-0.718	-0.0134	Yes
166	Pdgfb	19499	-1.129	0.0007	Yes