| Dataset | MPP.MPP_Pheno.cls#Group2_versus_Group3.MPP_Pheno.cls#Group2_versus_Group3_repos |
| Phenotype | MPP_Pheno.cls#Group2_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | -0.23592566 |
| Normalized Enrichment Score (NES) | -0.9461849 |
| Nominal p-value | 0.5417515 |
| FDR q-value | 1.0 |
| FWER p-Value | 1.0 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Fos | 154 | 0.699 | 0.0105 | No |
| 2 | Myof | 177 | 0.682 | 0.0273 | No |
| 3 | Bhlhe40 | 304 | 0.614 | 0.0370 | No |
| 4 | Gja1 | 305 | 0.614 | 0.0531 | No |
| 5 | Klf10 | 372 | 0.590 | 0.0653 | No |
| 6 | Kcnk5 | 468 | 0.563 | 0.0752 | No |
| 7 | Bcl11b | 610 | 0.526 | 0.0818 | No |
| 8 | Slc1a1 | 819 | 0.477 | 0.0836 | No |
| 9 | Il6st | 930 | 0.461 | 0.0901 | No |
| 10 | Scnn1a | 1035 | 0.446 | 0.0965 | No |
| 11 | Tgm2 | 1071 | 0.442 | 0.1063 | No |
| 12 | Farp1 | 1079 | 0.441 | 0.1176 | No |
| 13 | Mindy1 | 1646 | 0.377 | 0.0982 | No |
| 14 | Sybu | 1650 | 0.377 | 0.1080 | No |
| 15 | Cish | 1663 | 0.375 | 0.1173 | No |
| 16 | Fhl2 | 1845 | 0.359 | 0.1174 | No |
| 17 | Akap1 | 1979 | 0.350 | 0.1197 | No |
| 18 | Car12 | 2546 | 0.309 | 0.0986 | No |
| 19 | Hes1 | 2713 | 0.297 | 0.0979 | No |
| 20 | Rhod | 2788 | 0.293 | 0.1018 | No |
| 21 | Gla | 2978 | 0.279 | 0.0994 | No |
| 22 | Snx24 | 3106 | 0.271 | 0.1000 | No |
| 23 | Frk | 3111 | 0.271 | 0.1069 | No |
| 24 | Jak2 | 3350 | 0.254 | 0.1013 | No |
| 25 | B4galt1 | 3816 | 0.229 | 0.0833 | No |
| 26 | Mybbp1a | 3845 | 0.227 | 0.0878 | No |
| 27 | Flnb | 3867 | 0.226 | 0.0927 | No |
| 28 | Elovl2 | 4123 | 0.214 | 0.0852 | No |
| 29 | Slc1a4 | 4270 | 0.206 | 0.0830 | No |
| 30 | Gab2 | 4380 | 0.201 | 0.0827 | No |
| 31 | Tmprss3 | 4625 | 0.188 | 0.0750 | No |
| 32 | Ablim1 | 4686 | 0.186 | 0.0768 | No |
| 33 | Pmaip1 | 4862 | 0.176 | 0.0724 | No |
| 34 | Fkbp5 | 4925 | 0.174 | 0.0738 | No |
| 35 | Mpped2 | 5012 | 0.170 | 0.0738 | No |
| 36 | Isg20l2 | 5044 | 0.168 | 0.0767 | No |
| 37 | Siah2 | 5344 | 0.153 | 0.0652 | No |
| 38 | Med24 | 5361 | 0.152 | 0.0684 | No |
| 39 | Rab31 | 5649 | 0.139 | 0.0572 | No |
| 40 | Tbc1d30 | 5650 | 0.139 | 0.0609 | No |
| 41 | Muc1 | 5676 | 0.138 | 0.0633 | No |
| 42 | Rapgefl1 | 5707 | 0.136 | 0.0653 | No |
| 43 | Bag1 | 5717 | 0.136 | 0.0684 | No |
| 44 | Slc19a2 | 5938 | 0.127 | 0.0604 | No |
| 45 | Abhd2 | 5974 | 0.125 | 0.0619 | No |
| 46 | Endod1 | 5984 | 0.124 | 0.0647 | No |
| 47 | Slc16a1 | 6120 | 0.120 | 0.0609 | No |
| 48 | Inpp5f | 6151 | 0.119 | 0.0624 | No |
| 49 | Med13l | 6219 | 0.116 | 0.0620 | No |
| 50 | Igf1r | 6233 | 0.115 | 0.0644 | No |
| 51 | Rrp12 | 6249 | 0.114 | 0.0666 | No |
| 52 | Podxl | 6404 | 0.107 | 0.0615 | No |
| 53 | Zfp185 | 6791 | 0.091 | 0.0440 | No |
| 54 | Nav2 | 7031 | 0.082 | 0.0338 | No |
| 55 | Mapt | 7072 | 0.081 | 0.0338 | No |
| 56 | Svil | 7489 | 0.066 | 0.0141 | No |
| 57 | Sfn | 7505 | 0.065 | 0.0150 | No |
| 58 | Aff1 | 7650 | 0.060 | 0.0092 | No |
| 59 | Rbbp8 | 7985 | 0.048 | -0.0068 | No |
| 60 | Rara | 8240 | 0.038 | -0.0190 | No |
| 61 | Ret | 8245 | 0.037 | -0.0182 | No |
| 62 | Amfr | 8551 | 0.026 | -0.0333 | No |
| 63 | Scarb1 | 8608 | 0.023 | -0.0356 | No |
| 64 | Xbp1 | 8648 | 0.022 | -0.0370 | No |
| 65 | Slc37a1 | 8665 | 0.021 | -0.0373 | No |
| 66 | Slc24a3 | 8712 | 0.020 | -0.0391 | No |
| 67 | Ttc39a | 8735 | 0.019 | -0.0398 | No |
| 68 | Dynlt3 | 8916 | 0.014 | -0.0487 | No |
| 69 | Plaat3 | 9059 | 0.008 | -0.0558 | No |
| 70 | Add3 | 9082 | 0.007 | -0.0568 | No |
| 71 | Cxcl12 | 9286 | 0.000 | -0.0673 | No |
| 72 | Fdft1 | 9380 | -0.003 | -0.0720 | No |
| 73 | Anxa9 | 9527 | -0.008 | -0.0793 | No |
| 74 | Papss2 | 9623 | -0.012 | -0.0840 | No |
| 75 | Opn3 | 9637 | -0.012 | -0.0843 | No |
| 76 | Pex11a | 9776 | -0.017 | -0.0910 | No |
| 77 | Kazn | 9935 | -0.022 | -0.0986 | No |
| 78 | Mybl1 | 9948 | -0.023 | -0.0986 | No |
| 79 | Ptges | 10011 | -0.025 | -0.1011 | No |
| 80 | Fkbp4 | 10247 | -0.034 | -0.1124 | No |
| 81 | Slc27a2 | 10288 | -0.036 | -0.1135 | No |
| 82 | Tiparp | 10400 | -0.041 | -0.1182 | No |
| 83 | Fasn | 10459 | -0.042 | -0.1200 | No |
| 84 | Igfbp4 | 10508 | -0.044 | -0.1214 | No |
| 85 | Myb | 10735 | -0.052 | -0.1317 | No |
| 86 | Thsd4 | 10742 | -0.052 | -0.1306 | No |
| 87 | Pgr | 10822 | -0.055 | -0.1332 | No |
| 88 | Chpt1 | 10825 | -0.056 | -0.1319 | No |
| 89 | Tmem164 | 10889 | -0.058 | -0.1336 | No |
| 90 | Cldn7 | 10937 | -0.060 | -0.1345 | No |
| 91 | Retreg1 | 11045 | -0.063 | -0.1383 | No |
| 92 | Elovl5 | 11624 | -0.084 | -0.1660 | No |
| 93 | Ncor2 | 11702 | -0.088 | -0.1676 | No |
| 94 | Slc2a1 | 11956 | -0.098 | -0.1781 | No |
| 95 | Tiam1 | 12272 | -0.111 | -0.1915 | No |
| 96 | Ar | 12406 | -0.117 | -0.1953 | No |
| 97 | Gfra1 | 12440 | -0.118 | -0.1939 | No |
| 98 | Kdm4b | 12506 | -0.120 | -0.1941 | No |
| 99 | Cant1 | 12673 | -0.128 | -0.1993 | No |
| 100 | Slc26a2 | 12695 | -0.128 | -0.1970 | No |
| 101 | P2ry2 | 12943 | -0.138 | -0.2061 | No |
| 102 | Elf1 | 12974 | -0.139 | -0.2040 | No |
| 103 | Krt18 | 13076 | -0.143 | -0.2054 | No |
| 104 | Nadsyn1 | 13120 | -0.145 | -0.2038 | No |
| 105 | Slc7a5 | 13136 | -0.146 | -0.2008 | No |
| 106 | Nxt1 | 13155 | -0.147 | -0.1978 | No |
| 107 | Il17rb | 13175 | -0.148 | -0.1949 | No |
| 108 | Prss23 | 13197 | -0.148 | -0.1921 | No |
| 109 | Reep1 | 13256 | -0.150 | -0.1911 | No |
| 110 | Hspb8 | 13526 | -0.162 | -0.2008 | No |
| 111 | Sh3bp5 | 13614 | -0.166 | -0.2009 | No |
| 112 | Rps6ka2 | 13623 | -0.167 | -0.1969 | No |
| 113 | Pdzk1 | 13635 | -0.167 | -0.1930 | No |
| 114 | Itpk1 | 14064 | -0.185 | -0.2103 | No |
| 115 | Tgif2 | 14287 | -0.196 | -0.2166 | No |
| 116 | Celsr1 | 14346 | -0.198 | -0.2144 | No |
| 117 | Tpbg | 14362 | -0.199 | -0.2099 | No |
| 118 | Mast4 | 14395 | -0.200 | -0.2063 | No |
| 119 | Blvrb | 14636 | -0.212 | -0.2131 | No |
| 120 | Slc39a6 | 14701 | -0.216 | -0.2107 | No |
| 121 | Cyp26b1 | 15052 | -0.232 | -0.2227 | No |
| 122 | Cd44 | 15214 | -0.241 | -0.2247 | No |
| 123 | Deptor | 15433 | -0.252 | -0.2293 | Yes |
| 124 | Dlc1 | 15475 | -0.255 | -0.2247 | Yes |
| 125 | Arl3 | 15593 | -0.261 | -0.2239 | Yes |
| 126 | Dhrs3 | 15595 | -0.261 | -0.2171 | Yes |
| 127 | Adcy9 | 15783 | -0.271 | -0.2196 | Yes |
| 128 | Asb13 | 15890 | -0.277 | -0.2178 | Yes |
| 129 | Cbfa2t3 | 15953 | -0.280 | -0.2136 | Yes |
| 130 | Mlph | 15976 | -0.282 | -0.2073 | Yes |
| 131 | Rhobtb3 | 16025 | -0.284 | -0.2023 | Yes |
| 132 | Olfml3 | 16084 | -0.289 | -0.1977 | Yes |
| 133 | Nrip1 | 16098 | -0.289 | -0.1907 | Yes |
| 134 | Tpd52l1 | 16261 | -0.300 | -0.1912 | Yes |
| 135 | Syngr1 | 16356 | -0.307 | -0.1880 | Yes |
| 136 | Greb1 | 16455 | -0.313 | -0.1848 | Yes |
| 137 | Celsr2 | 16593 | -0.322 | -0.1834 | Yes |
| 138 | Sult2b1 | 16605 | -0.323 | -0.1755 | Yes |
| 139 | Myc | 16749 | -0.334 | -0.1741 | Yes |
| 140 | Slc7a2 | 16832 | -0.339 | -0.1694 | Yes |
| 141 | Abca3 | 16940 | -0.347 | -0.1658 | Yes |
| 142 | Stc2 | 16957 | -0.348 | -0.1574 | Yes |
| 143 | Tjp3 | 17005 | -0.351 | -0.1506 | Yes |
| 144 | Ugcg | 17254 | -0.368 | -0.1537 | Yes |
| 145 | Dhcr7 | 17269 | -0.369 | -0.1447 | Yes |
| 146 | Ppif | 17284 | -0.370 | -0.1357 | Yes |
| 147 | Aldh3b1 | 17891 | -0.431 | -0.1557 | Yes |
| 148 | Klf4 | 17911 | -0.433 | -0.1452 | Yes |
| 149 | Slc22a5 | 18029 | -0.448 | -0.1395 | Yes |
| 150 | Bcl2 | 18258 | -0.475 | -0.1387 | Yes |
| 151 | Wwc1 | 18383 | -0.489 | -0.1323 | Yes |
| 152 | Abat | 18508 | -0.510 | -0.1252 | Yes |
| 153 | Wfs1 | 18548 | -0.515 | -0.1137 | Yes |
| 154 | Lrig1 | 18665 | -0.536 | -0.1055 | Yes |
| 155 | Tob1 | 18695 | -0.542 | -0.0927 | Yes |
| 156 | Clic3 | 18814 | -0.565 | -0.0840 | Yes |
| 157 | Olfm1 | 18978 | -0.603 | -0.0765 | Yes |
| 158 | Rab17 | 19106 | -0.643 | -0.0661 | Yes |
| 159 | Mreg | 19121 | -0.652 | -0.0496 | Yes |
| 160 | Sec14l2 | 19419 | -0.839 | -0.0429 | Yes |
| 161 | Ccnd1 | 19449 | -0.889 | -0.0210 | Yes |
| 162 | Unc119 | 19460 | -0.917 | 0.0027 | Yes |

