Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MPP.MPP_Pheno.cls#Group2_versus_Group3.MPP_Pheno.cls#Group2_versus_Group3_repos
Phenotype	MPP_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.22504953
Normalized Enrichment Score (NES)	0.92225546
Nominal p-value	0.61804223
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Sparc	104	0.766	0.0172	Yes
2	Sfrp1	170	0.685	0.0341	Yes
3	Slit3	213	0.655	0.0512	Yes
4	Gja1	305	0.614	0.0647	Yes
5	Col4a1	396	0.581	0.0771	Yes
6	Efemp2	403	0.579	0.0939	Yes
7	Vcan	466	0.563	0.1073	Yes
8	Tgfbi	475	0.561	0.1234	Yes
9	Mest	684	0.506	0.1276	Yes
10	Copa	696	0.504	0.1419	Yes
11	Dst	714	0.499	0.1558	Yes
12	Jun	923	0.462	0.1587	Yes
13	Tgm2	1071	0.442	0.1642	Yes
14	Mcm7	1416	0.399	0.1582	Yes
15	Col5a2	1443	0.396	0.1685	Yes
16	Col5a1	1508	0.391	0.1767	Yes
17	Col8a2	1511	0.390	0.1881	Yes
18	Lrp1	1514	0.390	0.1995	Yes
19	Tnfrsf12a	1732	0.369	0.1992	Yes
20	Rhob	1779	0.364	0.2076	Yes
21	Sdc4	1904	0.355	0.2117	Yes
22	Col4a2	1983	0.349	0.2179	Yes
23	Adam12	2043	0.344	0.2250	Yes
24	Thbs1	2243	0.329	0.2245	No
25	Sdc1	2654	0.301	0.2122	No
26	Cald1	2921	0.284	0.2069	No
27	Itgb3	3051	0.276	0.2083	No
28	Plod1	3279	0.259	0.2043	No
29	Itgav	3461	0.248	0.2022	No
30	Itgb1	3573	0.242	0.2036	No
31	Vcam1	3604	0.240	0.2092	No
32	Mmp2	4449	0.198	0.1714	No
33	Comp	4470	0.196	0.1762	No
34	Sfrp4	4633	0.187	0.1734	No
35	Tpm4	4711	0.184	0.1748	No
36	Thbs2	4773	0.181	0.1770	No
37	Sat1	5185	0.161	0.1606	No
38	Magee1	5230	0.159	0.1630	No
39	Itga5	5348	0.153	0.1615	No
40	Mylk	5448	0.148	0.1607	No
41	Ppib	5481	0.146	0.1634	No
42	Lamc1	5653	0.139	0.1587	No
43	Col1a2	5685	0.137	0.1611	No
44	Plaur	5748	0.135	0.1619	No
45	Col1a1	5884	0.130	0.1587	No
46	Thy1	5913	0.128	0.1611	No
47	Basp1	6373	0.109	0.1406	No
48	Plod2	6407	0.107	0.1421	No
49	Fn1	6439	0.106	0.1436	No
50	Ntm	6445	0.106	0.1465	No
51	Fstl1	6581	0.100	0.1424	No
52	Id2	6593	0.100	0.1448	No
53	Lama3	6749	0.093	0.1396	No
54	Col5a3	6777	0.092	0.1409	No
55	Calu	7317	0.072	0.1152	No
56	Nt5e	7331	0.072	0.1166	No
57	Slc6a8	7374	0.070	0.1165	No
58	Lama1	7514	0.065	0.1113	No
59	Fbn1	7844	0.053	0.0959	No
60	Abi3bp	7951	0.049	0.0918	No
61	Flna	7970	0.048	0.0923	No
62	Sgcb	8478	0.029	0.0670	No
63	Ecm2	8563	0.025	0.0634	No
64	Mmp14	9029	0.009	0.0397	No
65	Cxcl12	9286	0.000	0.0265	No
66	Plod3	9370	-0.002	0.0223	No
67	Col16a1	9423	-0.004	0.0197	No
68	Tnfaip3	9446	-0.005	0.0187	No
69	Pfn2	9778	-0.017	0.0021	No
70	Qsox1	9984	-0.024	-0.0077	No
71	Cdh11	10153	-0.030	-0.0155	No
72	Fbln1	10310	-0.037	-0.0225	No
73	Cdh2	10355	-0.039	-0.0236	No
74	Tpm1	10428	-0.041	-0.0261	No
75	Postn	10451	-0.042	-0.0260	No
76	Igfbp4	10508	-0.044	-0.0276	No
77	Dab2	10517	-0.044	-0.0267	No
78	Gpx7	10779	-0.053	-0.0386	No
79	Loxl1	10830	-0.056	-0.0395	No
80	Col11a1	10940	-0.060	-0.0434	No
81	Tpm2	10983	-0.060	-0.0438	No
82	Fas	10999	-0.061	-0.0427	No
83	Tgfbr3	11082	-0.064	-0.0451	No
84	Pmepa1	11245	-0.071	-0.0514	No
85	Ecm1	11377	-0.075	-0.0559	No
86	Capg	11525	-0.081	-0.0611	No
87	Fap	11631	-0.085	-0.0640	No
88	Edil3	11676	-0.086	-0.0638	No
89	Wipf1	11678	-0.087	-0.0613	No
90	Slit2	11989	-0.100	-0.0743	No
91	Cdh6	12032	-0.101	-0.0735	No
92	Notch2	12079	-0.103	-0.0728	No
93	Vim	12123	-0.105	-0.0720	No
94	Vegfa	12131	-0.105	-0.0692	No
95	Tfpi2	12420	-0.117	-0.0806	No
96	Bmp1	12874	-0.135	-0.1000	No
97	Spock1	13044	-0.142	-0.1046	No
98	Serpinh1	13386	-0.156	-0.1176	No
99	Vegfc	13543	-0.163	-0.1208	No
100	Pvr	13549	-0.164	-0.1162	No
101	Gadd45a	13667	-0.169	-0.1173	No
102	Pdlim4	13671	-0.169	-0.1125	No
103	Gadd45b	13957	-0.181	-0.1218	No
104	Eno2	14611	-0.211	-0.1493	No
105	Pdgfrb	14903	-0.225	-0.1577	No
106	Il15	15200	-0.240	-0.1659	No
107	Cd44	15214	-0.241	-0.1595	No
108	Lgals1	15799	-0.271	-0.1816	No
109	Sntb1	15917	-0.278	-0.1794	No
110	Matn2	16153	-0.293	-0.1829	No
111	Sgcd	16273	-0.301	-0.1802	No
112	Fzd8	16355	-0.307	-0.1753	No
113	Emp3	16514	-0.317	-0.1741	No
114	Spp1	16549	-0.319	-0.1664	No
115	Serpine2	16612	-0.323	-0.1601	No
116	Itga2	16664	-0.327	-0.1531	No
117	Col7a1	16698	-0.330	-0.1451	No
118	Fuca1	16898	-0.343	-0.1452	No
119	Tgfb1	16902	-0.344	-0.1352	No
120	Tagln	16929	-0.346	-0.1264	No
121	Colgalt1	16983	-0.350	-0.1188	No
122	Fgf2	17073	-0.355	-0.1129	No
123	Col12a1	17246	-0.367	-0.1109	No
124	Nid2	17436	-0.384	-0.1094	No
125	Dpysl3	17496	-0.390	-0.1009	No
126	Cadm1	17523	-0.393	-0.0907	No
127	Itgb5	17549	-0.395	-0.0803	No
128	Gem	17755	-0.416	-0.0786	No
129	P3h1	17922	-0.434	-0.0744	No
130	Timp3	17957	-0.439	-0.0632	No
131	Gpc1	18000	-0.444	-0.0522	No
132	Bgn	18293	-0.479	-0.0532	No
133	Pcolce	18337	-0.484	-0.0411	No
134	Fstl3	18461	-0.502	-0.0327	No
135	Dcn	18612	-0.526	-0.0249	No
136	Anpep	18614	-0.527	-0.0094	No
137	Cap2	18704	-0.543	0.0021	No
138	Glipr1	18825	-0.566	0.0126	No
139	Lama2	19347	-0.774	0.0085	No