Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	MPP.MPP_Pheno.cls#Group2_versus_Group3.MPP_Pheno.cls#Group2_versus_Group3_repos
Phenotype	MPP_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	1
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	0.18252309
Normalized Enrichment Score (NES)	0.7759894
Nominal p-value	0.7828685
FDR q-value	1.0
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Dpyd	122	0.746	0.0183	Yes
2	Mcl1	335	0.602	0.0272	Yes
3	Casp4	379	0.587	0.0443	Yes
4	Cd38	383	0.584	0.0634	Yes
5	Aifm3	426	0.574	0.0801	Yes
6	Sptan1	571	0.535	0.0903	Yes
7	Tnfsf10	912	0.464	0.0880	Yes
8	Jun	923	0.462	0.1028	Yes
9	Txnip	1212	0.424	0.1019	Yes
10	Ppp3r1	1295	0.415	0.1113	Yes
11	App	1302	0.414	0.1246	Yes
12	Bmf	1308	0.413	0.1380	Yes
13	Nefh	1348	0.408	0.1494	Yes
14	Bik	1433	0.397	0.1582	Yes
15	Tnfrsf12a	1732	0.369	0.1549	Yes
16	Rhob	1779	0.364	0.1645	Yes
17	Tspo	1871	0.357	0.1716	Yes
18	H1f0	2017	0.347	0.1756	Yes
19	Ddit3	2183	0.335	0.1781	Yes
20	Pea15a	2305	0.325	0.1825	Yes
21	Irf1	2950	0.282	0.1586	No
22	Fez1	3011	0.278	0.1646	No
23	Timp2	3186	0.266	0.1644	No
24	Ebp	3390	0.252	0.1622	No
25	Gstm2	3680	0.236	0.1551	No
26	Cdkn1b	3711	0.234	0.1613	No
27	Cdkn1a	4008	0.219	0.1532	No
28	Smad7	4083	0.216	0.1565	No
29	Bcl2l2	4166	0.212	0.1592	No
30	Casp2	4302	0.205	0.1590	No
31	Brca1	4366	0.201	0.1624	No
32	Mmp2	4449	0.198	0.1647	No
33	Ank	4571	0.191	0.1647	No
34	Pmaip1	4862	0.176	0.1555	No
35	Ifitm3	5077	0.167	0.1500	No
36	Sat1	5185	0.161	0.1498	No
37	Ppt1	5199	0.161	0.1544	No
38	Dnm1l	5410	0.150	0.1485	No
39	Add1	5509	0.145	0.1482	No
40	Hgf	5579	0.141	0.1493	No
41	Etf1	5628	0.140	0.1514	No
42	Bcap31	5793	0.133	0.1474	No
43	Rela	6511	0.103	0.1137	No
44	Diablo	6555	0.101	0.1148	No
45	Bcl2l11	6635	0.098	0.1140	No
46	Atf3	6651	0.098	0.1164	No
47	Tgfb2	6656	0.097	0.1194	No
48	Sc5d	6682	0.096	0.1213	No
49	Psen2	6730	0.094	0.1220	No
50	Lgals3	6916	0.087	0.1153	No
51	Emp1	6989	0.083	0.1143	No
52	Hmox1	7062	0.081	0.1133	No
53	Sod2	7355	0.071	0.1005	No
54	Cdk2	7557	0.064	0.0923	No
55	Ier3	7906	0.050	0.0760	No
56	Rara	8240	0.038	0.0600	No
57	Psen1	8290	0.036	0.0587	No
58	Ptk2	8345	0.033	0.0570	No
59	Casp6	8510	0.027	0.0494	No
60	Dap	8768	0.018	0.0367	No
61	Casp8	8785	0.017	0.0365	No
62	Birc3	8862	0.015	0.0331	No
63	Crebbp	8896	0.014	0.0318	No
64	Madd	9092	0.007	0.0220	No
65	Pak1	9431	-0.004	0.0047	No
66	Gpx3	9444	-0.005	0.0042	No
67	Gsr	9547	-0.009	-0.0008	No
68	Sqstm1	9579	-0.010	-0.0020	No
69	Top2a	9593	-0.011	-0.0023	No
70	Pdcd4	9977	-0.024	-0.0213	No
71	Bnip3l	10111	-0.029	-0.0272	No
72	Lef1	10143	-0.030	-0.0278	No
73	Rock1	10186	-0.032	-0.0290	No
74	Dnajc3	10408	-0.041	-0.0390	No
75	Vdac2	10703	-0.050	-0.0525	No
76	Cyld	10724	-0.051	-0.0519	No
77	Cflar	10907	-0.059	-0.0593	No
78	Slc20a1	10909	-0.059	-0.0575	No
79	Rhot2	10918	-0.059	-0.0559	No
80	Fas	10999	-0.061	-0.0580	No
81	Tgfbr3	11082	-0.064	-0.0601	No
82	Tap1	11244	-0.071	-0.0661	No
83	Dap3	11508	-0.080	-0.0771	No
84	Mgmt	11630	-0.084	-0.0805	No
85	Casp7	11820	-0.093	-0.0872	No
86	Xiap	12017	-0.101	-0.0940	No
87	Hmgb2	12152	-0.106	-0.0974	No
88	Gpx4	12445	-0.118	-0.1086	No
89	Bcl10	12451	-0.118	-0.1050	No
90	Rnasel	12614	-0.125	-0.1092	No
91	Ctnnb1	12735	-0.130	-0.1111	No
92	Anxa1	12768	-0.131	-0.1084	No
93	Bax	12965	-0.139	-0.1140	No
94	Il18	12967	-0.139	-0.1095	No
95	Krt18	13076	-0.143	-0.1103	No
96	Casp1	13238	-0.149	-0.1137	No
97	Erbb3	13547	-0.164	-0.1242	No
98	Cd69	13565	-0.165	-0.1197	No
99	Gadd45a	13667	-0.169	-0.1193	No
100	Dffa	13715	-0.171	-0.1161	No
101	Gadd45b	13957	-0.181	-0.1226	No
102	Sod1	14177	-0.190	-0.1276	No
103	Fdxr	14383	-0.200	-0.1316	No
104	Plcb2	14525	-0.207	-0.1321	No
105	Bcl2l1	14555	-0.209	-0.1267	No
106	Eno2	14611	-0.211	-0.1226	No
107	Btg2	14644	-0.213	-0.1172	No
108	Igf2r	14869	-0.224	-0.1214	No
109	Pdgfrb	14903	-0.225	-0.1157	No
110	Lmna	14951	-0.228	-0.1106	No
111	Casp3	14971	-0.228	-0.1041	No
112	Gpx1	15072	-0.233	-0.1016	No
113	Wee1	15076	-0.234	-0.0940	No
114	Casp9	15135	-0.237	-0.0892	No
115	Cd44	15214	-0.241	-0.0853	No
116	Tnf	15218	-0.241	-0.0775	No
117	Cav1	15335	-0.248	-0.0754	No
118	Nedd9	15506	-0.256	-0.0757	No
119	Btg3	15523	-0.257	-0.0680	No
120	Gna15	15604	-0.261	-0.0636	No
121	Dnaja1	15684	-0.266	-0.0589	No
122	Satb1	16101	-0.290	-0.0708	No
123	Ppp2r5b	16346	-0.306	-0.0733	No
124	Clu	16584	-0.321	-0.0750	No
125	Ifngr1	16744	-0.333	-0.0722	No
126	Retsat	16801	-0.337	-0.0640	No
127	F2r	17405	-0.380	-0.0825	No
128	Timp3	17957	-0.439	-0.0965	No
129	Gch1	18248	-0.474	-0.0959	No
130	Cdc25b	18275	-0.477	-0.0815	No
131	Bgn	18293	-0.479	-0.0666	No
132	Dcn	18612	-0.526	-0.0657	No
133	Gsn	18896	-0.583	-0.0611	No
134	Isg20	19019	-0.613	-0.0472	No
135	Bid	19060	-0.626	-0.0286	No
136	Ccnd2	19194	-0.684	-0.0129	No
137	Ccnd1	19449	-0.889	0.0033	No