DatasetMEP.MEP.mega_Pheno.cls
#Group6_versus_Group8.MEP.mega_Pheno.cls
#Group6_versus_Group8_repos
PhenotypeMEP.mega_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class4
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.21084714
Normalized Enrichment Score (NES)1.1250818
Nominal p-value0.3148515
FDR q-value0.6653961
FWER p-Value0.978
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Dmd9890.487-0.0353Yes
2Marcks10450.478-0.0221Yes
3Fancc16770.393-0.0418Yes
4Pole17210.389-0.0310Yes
5Stil19030.378-0.0277Yes
6Sap3019060.378-0.0150Yes
7Chmp1a20100.367-0.0081Yes
8Traip24030.332-0.0174Yes
9Rad54l24320.331-0.0077Yes
10Cks224760.3270.0011Yes
11Polq24950.3260.0112Yes
12Tfdp126930.3090.0113Yes
13Tle327490.3040.0187Yes
14Plk427500.3040.0289Yes
15Bard127590.3040.0387Yes
16Brca228470.2970.0442Yes
17Stag129750.2880.0473Yes
18Slc7a129950.2870.0559Yes
19Lig330300.2840.0637Yes
20Aurka30470.2830.0724Yes
21Troap30850.2800.0800Yes
22E2f131130.2780.0879Yes
23Ilf331370.2770.0961Yes
24Tent4a33610.2640.0933Yes
25Espl135730.2550.0909Yes
26Mki6736270.2510.0966Yes
27Orc536440.2500.1042Yes
28Smarcc137970.2440.1044Yes
29Rbl138720.2380.1086Yes
30Ube2s39130.2350.1144Yes
31Hspa839500.2330.1204Yes
32Cdc740990.2240.1202Yes
33Tra2b41980.2190.1224Yes
34Pola242090.2180.1293Yes
35Nsd242570.2150.1341Yes
36Abl143540.2130.1362Yes
37Foxn343640.2130.1429Yes
38Kpnb143790.2120.1494Yes
39Notch243980.2110.1555Yes
40Efna544420.2090.1603Yes
41Pml45790.2040.1601Yes
42Hira46130.2020.1651Yes
43Rps6ka546170.2020.1718Yes
44H2bc1247540.1970.1713Yes
45Numa147900.1950.1761Yes
46Racgap148040.1950.1820Yes
47Odf248840.1910.1843Yes
48Upf150130.1840.1838Yes
49Rpa251670.1770.1817Yes
50Cdc25b52580.1730.1828Yes
51Odc153040.1710.1863Yes
52Rad23b53320.1700.1906Yes
53E2f353380.1700.1960Yes
54Nasp56830.1540.1832Yes
55Ctcf56840.1540.1884Yes
56Kif2257510.1510.1900Yes
57Hif1a57660.1500.1944Yes
58Slc38a157830.1490.1986Yes
59Tpx258210.1480.2016Yes
60Ttk58310.1470.2061Yes
61Tmpo59350.1440.2056Yes
62Dtymk61880.1330.1969Yes
63Cdc4562240.1320.1995Yes
64Casp8ap262440.1310.2029Yes
65Tnpo263800.1250.2001Yes
66Xpo163920.1250.2037Yes
67Kif2364170.1230.2066Yes
68Mcm365650.1170.2028Yes
69Aurkb66340.1150.2031Yes
70Kif1566440.1140.2065Yes
71Hnrnpu66840.1130.2083Yes
72Rasal267080.1120.2108Yes
73Mcm567900.1080.2103No
74Birc568920.1050.2085No
75Pds5b71000.0970.2010No
76Mtf271680.0950.2006No
77Smad371700.0950.2038No
78Hmgb372180.0930.2044No
79Lmnb172480.0910.2060No
80Smc273440.0880.2040No
81Kif474280.0850.2025No
82Hmga1b74320.0850.2053No
83Uck274930.0830.2049No
84Cenpf74950.0830.2077No
85Atrx76850.0750.2003No
86Nup9878140.0700.1960No
87Ss1878440.0690.1968No
88Wrn78940.0670.1965No
89E2f479540.0650.1956No
90Ncl79620.0640.1974No
91Kif2c79800.0640.1986No
92Hmmr79840.0630.2006No
93Chaf1a81820.0550.1922No
94Ccnb281880.0550.1937No
95Cul584420.0450.1820No
96G3bp185310.0420.1788No
97Lbr85380.0410.1799No
98Plk185620.0410.1801No
99Mnat188820.0290.1644No
100Orc688850.0290.1652No
101Sqle89140.0280.1647No
102Kif1190580.0230.1580No
103Ccna291140.0210.1559No
104H2az191300.0200.1558No
105Knl191310.0200.1564No
106H2az292050.0180.1532No
107Map3k2092210.0170.1530No
108Pbk93450.0130.1470No
109Prpf4b93980.0110.1446No
110Ccnt195960.0040.1345No
111Ccnf96500.0020.1318No
112Srsf196710.0010.1308No
113Prim296730.0010.1308No
114Meis297270.0000.1280No
115Smc49943-0.0010.1168No
116Kif20b9975-0.0020.1152No
117Top2a10014-0.0040.1134No
118Srsf1010038-0.0040.1123No
119Meis110072-0.0050.1108No
120Cdkn1b10078-0.0060.1107No
121Cenpe10106-0.0070.1095No
122Nek210115-0.0070.1093No
123Mybl210191-0.0090.1057No
124Tacc310332-0.0150.0989No
125Ddx39a10349-0.0160.0986No
126Ccnd110370-0.0160.0981No
127Ezh210469-0.0200.0936No
128Myc10474-0.0200.0941No
129Cenpa10521-0.0220.0925No
130Pafah1b110553-0.0230.0916No
131Smc1a10711-0.0280.0844No
132Rad2110936-0.0360.0739No
133H2ax10988-0.0380.0725No
134Suv39h110992-0.0380.0736No
135Mcm610993-0.0380.0749No
136Incenp11212-0.0450.0650No
137Katna111251-0.0470.0646No
138Mcm211273-0.0480.0651No
139Kmt5a11280-0.0480.0664No
140Hus111473-0.0550.0583No
141Cdc611595-0.0590.0539No
142Syncrip11598-0.0590.0558No
143Bub111611-0.0600.0572No
144Sfpq11629-0.0600.0583No
145Gspt111960-0.0720.0435No
146Cul112060-0.0760.0409No
147Top112190-0.0810.0369No
148Exo112236-0.0840.0373No
149Hnrnpd12274-0.0850.0383No
150Cul4a12299-0.0860.0399No
151Mad2l112316-0.0870.0420No
152Prc112411-0.0910.0402No
153Mapk1412465-0.0930.0405No
154Cdkn312482-0.0940.0429No
155Cdc25a12528-0.0960.0437No
156Fbxo512530-0.0960.0469No
157Cdc2712638-0.1010.0447No
158Cul312658-0.1020.0472No
159Cbx112776-0.1060.0446No
160Kif5b12824-0.1080.0458No
161Arid4a12841-0.1090.0487No
162Srsf212923-0.1130.0482No
163Dbf413051-0.1190.0456No
164Nup5013207-0.1240.0417No
165Nusap113408-0.1330.0357No
166Ewsr113452-0.1360.0380No
167Nolc113617-0.1430.0343No
168Pttg113890-0.1560.0253No
169Pura14036-0.1630.0232No
170Dkc114050-0.1640.0281No
171Ndc8014063-0.1650.0330No
172Ythdc114149-0.1680.0342No
173Jpt114318-0.1750.0313No
174Prmt514442-0.1800.0309No
175Slc7a514490-0.1820.0346No
176Tgfb114662-0.1910.0321No
177E2f214765-0.1960.0334No
178Egf14881-0.2020.0342No
179Stmn114981-0.2080.0360No
180Ube2c15723-0.2460.0056No
181Slc12a215986-0.2600.0006No
182Amd116575-0.297-0.0201No
183Snrpd116810-0.312-0.0218No
184Atf516904-0.319-0.0159No
185Cdk416922-0.321-0.0060No
186Cdk116948-0.3230.0036No
187Dr116977-0.3250.0130No
188Bub317476-0.366-0.0007No
189Chek117860-0.407-0.0070No
190Gins218112-0.438-0.0054No
191Cdkn2c18174-0.4450.0064No
192Bcl318206-0.4490.0200No
193Cdc2018716-0.5330.0113No
194Cks1b18887-0.5800.0220No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT