Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MEP.MEP.mega_Pheno.cls #Group6_versus_Group8.MEP.mega_Pheno.cls #Group6_versus_Group8_repos
Phenotype	MEP.mega_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	4
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.28006485
Normalized Enrichment Score (NES)	1.1956029
Nominal p-value	0.09751434
FDR q-value	1.0
FWER p-Value	0.937

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Serpinh1	15	1.083	0.0273	Yes
2	Gem	97	0.825	0.0444	Yes
3	Fstl3	117	0.801	0.0641	Yes
4	Thbs1	134	0.783	0.0836	Yes
5	Mmp2	152	0.763	0.1024	Yes
6	Tnfrsf12a	480	0.597	0.1008	Yes
7	Ecm2	515	0.584	0.1141	Yes
8	Pdgfrb	597	0.561	0.1244	Yes
9	Tagln	880	0.508	0.1229	Yes
10	Vegfc	944	0.496	0.1324	Yes
11	Col16a1	1042	0.479	0.1397	Yes
12	Gadd45b	1050	0.476	0.1517	Yes
13	Calu	1070	0.473	0.1630	Yes
14	Ecm1	1143	0.460	0.1711	Yes
15	Tfpi2	1153	0.458	0.1825	Yes
16	Myl9	1233	0.445	0.1899	Yes
17	Fbn1	1237	0.444	0.2012	Yes
18	Magee1	1257	0.442	0.2117	Yes
19	Plod3	1310	0.435	0.2202	Yes
20	Sfrp1	1459	0.417	0.2233	Yes
21	Cdh2	1550	0.404	0.2290	Yes
22	Tpm4	1660	0.393	0.2335	Yes
23	Gja1	1720	0.389	0.2405	Yes
24	Fermt2	1734	0.389	0.2499	Yes
25	Adam12	1965	0.374	0.2476	Yes
26	Flna	2414	0.332	0.2328	Yes
27	Slc6a8	2447	0.330	0.2397	Yes
28	Fzd8	2632	0.315	0.2382	Yes
29	Lgals1	2642	0.314	0.2459	Yes
30	Col7a1	2792	0.301	0.2459	Yes
31	Pvr	2971	0.288	0.2440	Yes
32	Col4a1	3033	0.284	0.2482	Yes
33	Il15	3046	0.283	0.2549	Yes
34	Cdh11	3135	0.277	0.2575	Yes
35	Tpm2	3147	0.276	0.2640	Yes
36	Pcolce	3173	0.274	0.2698	Yes
37	Lama3	3177	0.274	0.2768	Yes
38	Vcam1	3250	0.272	0.2801	Yes
39	Sntb1	3488	0.259	0.2744	No
40	Thbs2	3930	0.234	0.2574	No
41	Spock1	4152	0.221	0.2516	No
42	Notch2	4398	0.211	0.2443	No
43	P3h1	4597	0.203	0.2392	No
44	Timp3	4749	0.197	0.2365	No
45	Mylk	4766	0.197	0.2407	No
46	Wipf1	4771	0.196	0.2456	No
47	Sdc1	4918	0.189	0.2428	No
48	Abi3bp	4971	0.186	0.2449	No
49	Comp	5015	0.184	0.2475	No
50	Bmp1	5065	0.181	0.2496	No
51	Lama2	5069	0.181	0.2541	No
52	Copa	5196	0.176	0.2521	No
53	Col4a2	5341	0.170	0.2490	No
54	Jun	5393	0.167	0.2506	No
55	Sat1	5517	0.162	0.2484	No
56	Slit3	5713	0.153	0.2422	No
57	Itgb3	5787	0.149	0.2422	No
58	Vegfa	5815	0.148	0.2447	No
59	Edil3	5826	0.147	0.2480	No
60	Tgm2	6037	0.140	0.2406	No
61	Itgb5	6219	0.132	0.2346	No
62	Itgav	7124	0.096	0.1899	No
63	Slit2	7126	0.096	0.1924	No
64	Id2	7139	0.096	0.1942	No
65	Dcn	7277	0.090	0.1894	No
66	Cald1	7387	0.087	0.1860	No
67	Itga5	8374	0.048	0.1358	No
68	Lrp1	8689	0.036	0.1203	No
69	Plod1	8710	0.035	0.1202	No
70	Tpm1	9257	0.016	0.0921	No
71	Sgcd	9324	0.013	0.0890	No
72	Lamc1	9442	0.009	0.0832	No
73	Fbn2	9920	-0.000	0.0583	No
74	Itgb1	9942	-0.001	0.0572	No
75	Fgf2	10086	-0.006	0.0499	No
76	Eno2	11142	-0.044	-0.0039	No
77	Pfn2	11191	-0.045	-0.0053	No
78	Rhob	11279	-0.048	-0.0086	No
79	Fap	11282	-0.048	-0.0074	No
80	Dst	11336	-0.050	-0.0089	No
81	Cd44	11601	-0.059	-0.0211	No
82	Plod2	11684	-0.062	-0.0238	No
83	Lama1	12069	-0.077	-0.0418	No
84	Pmp22	12149	-0.080	-0.0439	No
85	Igfbp4	12215	-0.083	-0.0452	No
86	Tgfbr3	12235	-0.083	-0.0440	No
87	Cxcl5	12608	-0.099	-0.0608	No
88	Gadd45a	12757	-0.106	-0.0658	No
89	Fstl1	12785	-0.107	-0.0644	No
90	Vim	12967	-0.115	-0.0709	No
91	Sparc	13052	-0.119	-0.0722	No
92	Vcan	13054	-0.119	-0.0692	No
93	Dab2	13249	-0.126	-0.0761	No
94	Sfrp4	13295	-0.129	-0.0751	No
95	Gpc1	13353	-0.131	-0.0747	No
96	Tgfbi	13354	-0.131	-0.0713	No
97	Thy1	13788	-0.152	-0.0899	No
98	Efemp2	14042	-0.163	-0.0989	No
99	Col11a1	14117	-0.167	-0.0984	No
100	Qsox1	14437	-0.180	-0.1104	No
101	Colgalt1	14554	-0.186	-0.1117	No
102	Gpx7	14623	-0.189	-0.1103	No
103	Tgfb1	14662	-0.191	-0.1074	No
104	Bgn	14705	-0.193	-0.1046	No
105	Anpep	14764	-0.196	-0.1025	No
106	Mmp14	15095	-0.214	-0.1142	No
107	Mest	15202	-0.220	-0.1140	No
108	Ppib	15549	-0.235	-0.1260	No
109	Fbln1	15563	-0.235	-0.1206	No
110	Sgcb	15729	-0.246	-0.1228	No
111	Basp1	16015	-0.262	-0.1309	No
112	Col1a1	16099	-0.267	-0.1283	No
113	Fuca1	16161	-0.271	-0.1245	No
114	Mcm7	16165	-0.271	-0.1176	No
115	Nid2	16181	-0.272	-0.1113	No
116	Fas	16265	-0.277	-0.1085	No
117	Loxl1	16547	-0.296	-0.1155	No
118	Matn2	16624	-0.301	-0.1117	No
119	Cadm1	17230	-0.343	-0.1344	No
120	Capg	17553	-0.372	-0.1415	No
121	Serpine2	17835	-0.403	-0.1457	No
122	Itga2	17871	-0.408	-0.1370	No
123	Pmepa1	17962	-0.417	-0.1309	No
124	Cap2	18108	-0.438	-0.1271	No
125	Emp3	18749	-0.540	-0.1465	No
126	Nt5e	18786	-0.550	-0.1342	No
127	Col1a2	18824	-0.561	-0.1216	No
128	Fn1	18850	-0.567	-0.1082	No
129	Tnfaip3	18920	-0.590	-0.0966	No
130	Glipr1	18951	-0.601	-0.0826	No
131	Il6	19192	-0.741	-0.0759	No
132	Ntm	19254	-0.829	-0.0576	No
133	Col5a1	19298	-1.090	-0.0317	No
134	Plaur	19305	-1.241	0.0001	No