Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	MEP.MEP.mega_Pheno.cls #Group3_versus_Group4.MEP.mega_Pheno.cls #Group3_versus_Group4_repos
Phenotype	MEP.mega_Pheno.cls#Group3_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.2441786
Normalized Enrichment Score (NES)	-1.0817006
Nominal p-value	0.3503937
FDR q-value	0.94934416
FWER p-Value	0.982

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Ccnd1	6	1.387	0.0451	No
2	Tnf	325	0.675	0.0506	No
3	Anxa1	481	0.621	0.0628	No
4	F2r	711	0.558	0.0691	No
5	Cdc25b	716	0.555	0.0871	No
6	Etf1	733	0.551	0.1043	No
7	Erbb3	1323	0.445	0.0881	No
8	Mmp2	1584	0.418	0.0883	No
9	Gpx3	1655	0.410	0.0980	No
10	App	1714	0.403	0.1082	No
11	Mgmt	2423	0.331	0.0821	No
12	Cth	2444	0.329	0.0918	No
13	Il1b	2476	0.327	0.1009	No
14	Pmaip1	2727	0.308	0.0979	No
15	Brca1	2749	0.306	0.1068	No
16	Sc5d	3429	0.259	0.0799	No
17	Atf3	3486	0.255	0.0853	No
18	Igfbp6	3784	0.243	0.0777	No
19	Cdkn1a	4196	0.220	0.0635	No
20	Ctnnb1	4368	0.213	0.0615	No
21	Vdac2	4481	0.205	0.0624	No
22	Tgfb2	4554	0.201	0.0653	No
23	Gna15	4692	0.194	0.0645	No
24	Slc20a1	4717	0.192	0.0695	No
25	Bgn	4768	0.189	0.0731	No
26	Bax	5107	0.170	0.0610	No
27	Top2a	5514	0.149	0.0447	No
28	Bcl2l2	5756	0.138	0.0367	No
29	Dpyd	5941	0.130	0.0313	No
30	Egr3	5961	0.129	0.0345	No
31	Lgals3	5966	0.129	0.0386	No
32	Dnajc3	6151	0.122	0.0330	No
33	Pak1	6174	0.121	0.0358	No
34	Rhot2	6188	0.121	0.0391	No
35	Cd69	6372	0.114	0.0332	No
36	Ddit3	6456	0.110	0.0325	No
37	Btg3	6457	0.110	0.0361	No
38	Irf1	6670	0.101	0.0283	No
39	Wee1	7018	0.087	0.0131	No
40	Pdcd4	7098	0.084	0.0117	No
41	Tgfbr3	7114	0.083	0.0137	No
42	Bnip3l	7385	0.074	0.0020	No
43	Timp3	7453	0.073	0.0009	No
44	Rela	7459	0.072	0.0030	No
45	Gch1	7557	0.068	0.0002	No
46	Casp1	7865	0.056	-0.0140	No
47	Casp2	7938	0.053	-0.0160	No
48	Bid	8040	0.049	-0.0197	No
49	Timp2	8075	0.048	-0.0199	No
50	Casp8	8458	0.034	-0.0388	No
51	Bcap31	8781	0.022	-0.0548	No
52	Il6	8941	0.018	-0.0625	No
53	Sqstm1	9115	0.012	-0.0712	No
54	Hmgb2	9678	-0.002	-0.1004	No
55	Ccnd2	9919	-0.010	-0.1126	No
56	Ppp3r1	10116	-0.016	-0.1223	No
57	Rara	10135	-0.017	-0.1227	No
58	Dap3	10192	-0.019	-0.1250	No
59	Casp7	10252	-0.022	-0.1273	No
60	H1f0	10310	-0.024	-0.1296	No
61	Casp9	10334	-0.024	-0.1300	No
62	Tnfrsf12a	10547	-0.031	-0.1400	No
63	Jun	10815	-0.041	-0.1526	No
64	Mcl1	10877	-0.043	-0.1544	No
65	Cd44	10947	-0.046	-0.1565	No
66	Casp4	11002	-0.048	-0.1577	No
67	Btg2	11007	-0.048	-0.1564	No
68	F2	11044	-0.049	-0.1566	No
69	Retsat	11201	-0.055	-0.1630	No
70	Psen1	11309	-0.059	-0.1666	No
71	Smad7	11334	-0.060	-0.1659	No
72	Gadd45b	11418	-0.063	-0.1682	No
73	Cyld	11490	-0.066	-0.1697	No
74	Bcl2l1	11594	-0.070	-0.1728	No
75	Add1	11622	-0.071	-0.1719	No
76	Diablo	11735	-0.075	-0.1753	No
77	Rock1	11815	-0.078	-0.1769	No
78	Ebp	11924	-0.082	-0.1798	No
79	Hgf	11928	-0.082	-0.1773	No
80	Sptan1	12236	-0.093	-0.1903	No
81	Tnfsf10	12265	-0.094	-0.1887	No
82	Tap1	12292	-0.095	-0.1869	No
83	Dffa	12311	-0.096	-0.1847	No
84	Gpx4	12324	-0.097	-0.1822	No
85	Casp6	12446	-0.101	-0.1852	No
86	Casp3	12526	-0.104	-0.1859	No
87	Hmox1	12732	-0.112	-0.1929	No
88	Ifngr1	12945	-0.120	-0.2001	No
89	Bcl10	12985	-0.121	-0.1981	No
90	Cdk2	13145	-0.127	-0.2023	No
91	Cav1	13170	-0.127	-0.1994	No
92	Dnaja1	13398	-0.137	-0.2067	No
93	Isg20	13694	-0.149	-0.2173	No
94	Plcb2	13724	-0.150	-0.2139	No
95	Rhob	13743	-0.151	-0.2099	No
96	Madd	13805	-0.154	-0.2080	No
97	Igf2r	14357	-0.179	-0.2309	No
98	Gpx1	14400	-0.181	-0.2272	No
99	Ptk2	14476	-0.184	-0.2251	No
100	Cdkn1b	14634	-0.192	-0.2270	No
101	Xiap	14706	-0.196	-0.2243	No
102	Bmp2	15088	-0.211	-0.2373	Yes
103	Crebbp	15121	-0.213	-0.2320	Yes
104	Birc3	15214	-0.218	-0.2296	Yes
105	Eno2	15336	-0.223	-0.2286	Yes
106	Lef1	15503	-0.232	-0.2297	Yes
107	Bik	15524	-0.233	-0.2232	Yes
108	Cd38	15598	-0.237	-0.2192	Yes
109	Bmf	15645	-0.239	-0.2138	Yes
110	Cflar	15752	-0.243	-0.2114	Yes
111	Fdxr	15829	-0.247	-0.2072	Yes
112	Psen2	15852	-0.249	-0.2002	Yes
113	Krt18	15853	-0.249	-0.1921	Yes
114	Aifm3	15974	-0.256	-0.1900	Yes
115	Gsn	16038	-0.258	-0.1848	Yes
116	Ier3	16095	-0.262	-0.1791	Yes
117	Tspo	16114	-0.263	-0.1715	Yes
118	Dcn	16248	-0.271	-0.1695	Yes
119	Il18	16321	-0.274	-0.1643	Yes
120	Pdgfrb	16490	-0.285	-0.1638	Yes
121	Ank	16495	-0.285	-0.1546	Yes
122	Nefh	16623	-0.291	-0.1517	Yes
123	Fas	16633	-0.292	-0.1426	Yes
124	Sod1	16849	-0.306	-0.1438	Yes
125	Ppt1	16963	-0.315	-0.1394	Yes
126	Sod2	17049	-0.319	-0.1334	Yes
127	Gsr	17081	-0.321	-0.1245	Yes
128	Txnip	17087	-0.321	-0.1143	Yes
129	Lmna	17178	-0.326	-0.1083	Yes
130	Dnm1l	17624	-0.364	-0.1196	Yes
131	Clu	17698	-0.371	-0.1113	Yes
132	Bcl2l11	18030	-0.404	-0.1153	Yes
133	Ppp2r5b	18104	-0.412	-0.1056	Yes
134	Gstm2	18329	-0.439	-0.1029	Yes
135	Il1a	18353	-0.443	-0.0897	Yes
136	Sat1	18354	-0.443	-0.0752	Yes
137	Dap	18370	-0.445	-0.0614	Yes
138	Nedd9	18643	-0.489	-0.0595	Yes
139	Rnasel	18725	-0.508	-0.0472	Yes
140	Ifitm3	18914	-0.560	-0.0386	Yes
141	Gadd45a	18991	-0.595	-0.0231	Yes
142	Pea15a	18997	-0.596	-0.0038	Yes
143	Satb1	19028	-0.610	0.0146	Yes