| Dataset | MEP.MEP.mega_Pheno.cls #Group2_versus_Group4.MEP.mega_Pheno.cls #Group2_versus_Group4_repos |
| Phenotype | MEP.mega_Pheno.cls#Group2_versus_Group4_repos |
| Upregulated in class | 3 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_LATE |
| Enrichment Score (ES) | -0.21566096 |
| Normalized Enrichment Score (NES) | -0.89707035 |
| Nominal p-value | 0.6600398 |
| FDR q-value | 0.9202703 |
| FWER p-Value | 0.994 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Homer2 | 38 | 0.932 | 0.0236 | No |
| 2 | Rps6ka2 | 243 | 0.691 | 0.0318 | No |
| 3 | Dlg5 | 271 | 0.674 | 0.0489 | No |
| 4 | Chpt1 | 473 | 0.599 | 0.0548 | No |
| 5 | Plac1 | 490 | 0.595 | 0.0703 | No |
| 6 | Xbp1 | 588 | 0.570 | 0.0809 | No |
| 7 | Gper1 | 801 | 0.525 | 0.0842 | No |
| 8 | Il6st | 917 | 0.509 | 0.0921 | No |
| 9 | Il17rb | 1276 | 0.457 | 0.0860 | No |
| 10 | Slc16a1 | 1328 | 0.450 | 0.0956 | No |
| 11 | Cyp26b1 | 1376 | 0.444 | 0.1053 | No |
| 12 | Kcnk5 | 1412 | 0.440 | 0.1156 | No |
| 13 | Tnnc1 | 1538 | 0.424 | 0.1207 | No |
| 14 | Rab31 | 2247 | 0.356 | 0.0934 | No |
| 15 | Fos | 2390 | 0.346 | 0.0955 | No |
| 16 | Sord | 2929 | 0.307 | 0.0758 | No |
| 17 | Mest | 3030 | 0.303 | 0.0789 | No |
| 18 | Slc29a1 | 3246 | 0.287 | 0.0756 | No |
| 19 | Kif20a | 3254 | 0.287 | 0.0831 | No |
| 20 | Top2a | 3260 | 0.287 | 0.0907 | No |
| 21 | Mdk | 3445 | 0.274 | 0.0886 | No |
| 22 | Unc13b | 3596 | 0.265 | 0.0880 | No |
| 23 | Btg3 | 3821 | 0.251 | 0.0832 | No |
| 24 | Large1 | 3828 | 0.250 | 0.0897 | No |
| 25 | Sgk1 | 4085 | 0.238 | 0.0829 | No |
| 26 | Amfr | 4232 | 0.230 | 0.0816 | No |
| 27 | Llgl2 | 4351 | 0.222 | 0.0815 | No |
| 28 | Opn3 | 4473 | 0.215 | 0.0811 | No |
| 29 | Slc7a5 | 4571 | 0.212 | 0.0818 | No |
| 30 | Jak1 | 4623 | 0.208 | 0.0848 | No |
| 31 | Aldh3a2 | 4889 | 0.193 | 0.0763 | No |
| 32 | Siah2 | 4921 | 0.191 | 0.0799 | No |
| 33 | Sfn | 4990 | 0.187 | 0.0815 | No |
| 34 | Pdcd4 | 5335 | 0.173 | 0.0683 | No |
| 35 | Sult2b1 | 5858 | 0.151 | 0.0451 | No |
| 36 | Id2 | 5900 | 0.149 | 0.0471 | No |
| 37 | Idh2 | 6062 | 0.139 | 0.0425 | No |
| 38 | Arl3 | 6159 | 0.134 | 0.0411 | No |
| 39 | Scnn1a | 6219 | 0.132 | 0.0417 | No |
| 40 | Aff1 | 6373 | 0.124 | 0.0371 | No |
| 41 | Jak2 | 6499 | 0.118 | 0.0338 | No |
| 42 | Plk4 | 6517 | 0.117 | 0.0361 | No |
| 43 | Bag1 | 6623 | 0.112 | 0.0337 | No |
| 44 | Fdft1 | 6736 | 0.106 | 0.0308 | No |
| 45 | Ugdh | 6758 | 0.106 | 0.0326 | No |
| 46 | Lsr | 6808 | 0.103 | 0.0328 | No |
| 47 | Cdh1 | 6892 | 0.099 | 0.0312 | No |
| 48 | Aldh3b1 | 6952 | 0.096 | 0.0308 | No |
| 49 | Add3 | 6980 | 0.095 | 0.0320 | No |
| 50 | Tmprss3 | 7164 | 0.087 | 0.0248 | No |
| 51 | Mapt | 7651 | 0.066 | 0.0012 | No |
| 52 | Hspa4l | 7761 | 0.061 | -0.0028 | No |
| 53 | Rapgefl1 | 7769 | 0.061 | -0.0015 | No |
| 54 | Ccnd1 | 7774 | 0.061 | -0.0000 | No |
| 55 | Dnajc1 | 7783 | 0.060 | 0.0012 | No |
| 56 | Gfus | 7792 | 0.060 | 0.0024 | No |
| 57 | Chst8 | 7795 | 0.060 | 0.0040 | No |
| 58 | Slc24a3 | 8008 | 0.052 | -0.0057 | No |
| 59 | Hmgcs2 | 8191 | 0.044 | -0.0140 | No |
| 60 | Bcl2 | 8377 | 0.036 | -0.0227 | No |
| 61 | Ptges | 8416 | 0.033 | -0.0237 | No |
| 62 | Celsr2 | 8525 | 0.028 | -0.0286 | No |
| 63 | Itpk1 | 8817 | 0.015 | -0.0434 | No |
| 64 | Olfm1 | 8827 | 0.015 | -0.0434 | No |
| 65 | Myof | 9143 | 0.003 | -0.0598 | No |
| 66 | Fkbp4 | 9178 | 0.002 | -0.0615 | No |
| 67 | Ltf | 9229 | 0.000 | -0.0641 | No |
| 68 | Foxc1 | 9241 | 0.000 | -0.0647 | No |
| 69 | Atp2b4 | 9507 | -0.009 | -0.0783 | No |
| 70 | Pgr | 9765 | -0.020 | -0.0912 | No |
| 71 | Klf4 | 9839 | -0.023 | -0.0943 | No |
| 72 | Cdc20 | 10115 | -0.034 | -0.1077 | No |
| 73 | Anxa9 | 10156 | -0.036 | -0.1088 | No |
| 74 | Abhd2 | 10182 | -0.037 | -0.1091 | No |
| 75 | Mettl3 | 10357 | -0.045 | -0.1170 | No |
| 76 | Rbbp8 | 10371 | -0.046 | -0.1164 | No |
| 77 | Ptger3 | 10375 | -0.046 | -0.1153 | No |
| 78 | Impa2 | 10507 | -0.051 | -0.1208 | No |
| 79 | Tjp3 | 10518 | -0.051 | -0.1199 | No |
| 80 | Ass1 | 10639 | -0.056 | -0.1246 | No |
| 81 | Stil | 10689 | -0.058 | -0.1256 | No |
| 82 | Rabep1 | 10717 | -0.059 | -0.1254 | No |
| 83 | Gla | 10876 | -0.064 | -0.1318 | No |
| 84 | Snx10 | 10881 | -0.065 | -0.1303 | No |
| 85 | Cav1 | 11014 | -0.071 | -0.1352 | No |
| 86 | Plaat3 | 11067 | -0.073 | -0.1360 | No |
| 87 | Hspb8 | 11128 | -0.075 | -0.1370 | No |
| 88 | Fkbp5 | 11176 | -0.077 | -0.1374 | No |
| 89 | Prlr | 11179 | -0.077 | -0.1354 | No |
| 90 | Dynlt3 | 11203 | -0.078 | -0.1344 | No |
| 91 | Elovl5 | 11310 | -0.083 | -0.1377 | No |
| 92 | Slc1a4 | 11351 | -0.084 | -0.1375 | No |
| 93 | Egr3 | 11520 | -0.090 | -0.1438 | No |
| 94 | Slc22a5 | 11736 | -0.099 | -0.1523 | No |
| 95 | Farp1 | 11909 | -0.107 | -0.1584 | No |
| 96 | Gins2 | 11993 | -0.110 | -0.1597 | No |
| 97 | Cdc6 | 12095 | -0.115 | -0.1618 | No |
| 98 | Prkar2b | 12205 | -0.119 | -0.1643 | No |
| 99 | Cd44 | 12511 | -0.133 | -0.1765 | No |
| 100 | Cish | 12517 | -0.133 | -0.1732 | No |
| 101 | Slc26a2 | 12570 | -0.135 | -0.1722 | No |
| 102 | Ret | 12686 | -0.140 | -0.1744 | No |
| 103 | Tob1 | 13018 | -0.156 | -0.1874 | No |
| 104 | Nrip1 | 13331 | -0.170 | -0.1990 | No |
| 105 | Blvrb | 13651 | -0.185 | -0.2106 | Yes |
| 106 | Cox6c | 13706 | -0.187 | -0.2083 | Yes |
| 107 | Papss2 | 13789 | -0.191 | -0.2073 | Yes |
| 108 | Cd9 | 13823 | -0.193 | -0.2038 | Yes |
| 109 | Scarb1 | 13920 | -0.197 | -0.2034 | Yes |
| 110 | Tspan13 | 13974 | -0.200 | -0.2007 | Yes |
| 111 | St14 | 14026 | -0.202 | -0.1978 | Yes |
| 112 | Tfpi2 | 14086 | -0.206 | -0.1952 | Yes |
| 113 | Myb | 14206 | -0.210 | -0.1957 | Yes |
| 114 | Abca3 | 14218 | -0.210 | -0.1905 | Yes |
| 115 | Wfs1 | 14318 | -0.214 | -0.1898 | Yes |
| 116 | Pkp3 | 14330 | -0.215 | -0.1845 | Yes |
| 117 | Isg20 | 14364 | -0.217 | -0.1802 | Yes |
| 118 | Car2 | 14527 | -0.224 | -0.1826 | Yes |
| 119 | Frk | 14651 | -0.231 | -0.1826 | Yes |
| 120 | S100a9 | 14945 | -0.247 | -0.1912 | Yes |
| 121 | Cacna2d2 | 15147 | -0.258 | -0.1946 | Yes |
| 122 | Zfp36 | 15204 | -0.261 | -0.1904 | Yes |
| 123 | Plxnb1 | 15215 | -0.261 | -0.1837 | Yes |
| 124 | Flnb | 15216 | -0.261 | -0.1766 | Yes |
| 125 | Tiam1 | 15281 | -0.265 | -0.1726 | Yes |
| 126 | Batf | 15322 | -0.268 | -0.1674 | Yes |
| 127 | Clic3 | 15418 | -0.274 | -0.1649 | Yes |
| 128 | Ptpn6 | 15661 | -0.286 | -0.1696 | Yes |
| 129 | Dnajc12 | 16459 | -0.338 | -0.2020 | Yes |
| 130 | St6galnac2 | 16478 | -0.339 | -0.1936 | Yes |
| 131 | Ncor2 | 16495 | -0.341 | -0.1851 | Yes |
| 132 | Pdzk1 | 17015 | -0.379 | -0.2018 | Yes |
| 133 | Perp | 17116 | -0.387 | -0.1965 | Yes |
| 134 | Etfb | 17225 | -0.395 | -0.1913 | Yes |
| 135 | Fgfr3 | 17226 | -0.396 | -0.1804 | Yes |
| 136 | Car12 | 17273 | -0.398 | -0.1719 | Yes |
| 137 | Tpd52l1 | 17418 | -0.411 | -0.1682 | Yes |
| 138 | Ppif | 17536 | -0.421 | -0.1627 | Yes |
| 139 | Mocs2 | 17546 | -0.422 | -0.1516 | Yes |
| 140 | Igfbp4 | 17801 | -0.450 | -0.1526 | Yes |
| 141 | Nxt1 | 17831 | -0.453 | -0.1417 | Yes |
| 142 | Dhcr7 | 18087 | -0.486 | -0.1417 | Yes |
| 143 | Dcxr | 18092 | -0.486 | -0.1285 | Yes |
| 144 | Ckb | 18392 | -0.533 | -0.1295 | Yes |
| 145 | Xrcc3 | 18524 | -0.554 | -0.1212 | Yes |
| 146 | Rnaseh2a | 18686 | -0.593 | -0.1134 | Yes |
| 147 | Nab2 | 18832 | -0.631 | -0.1036 | Yes |
| 148 | Fabp5 | 18904 | -0.658 | -0.0893 | Yes |
| 149 | Slc2a8 | 18973 | -0.686 | -0.0741 | Yes |
| 150 | Gale | 19228 | -0.916 | -0.0622 | Yes |
| 151 | Tst | 19263 | -1.042 | -0.0354 | Yes |
| 152 | Dusp2 | 19305 | -1.375 | 0.0001 | Yes |

