Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MEP.MEP.mega_Pheno.cls #Group2_versus_Group4.MEP.mega_Pheno.cls #Group2_versus_Group4_repos
Phenotype	MEP.mega_Pheno.cls#Group2_versus_Group4_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.19494964
Normalized Enrichment Score (NES)	0.7334351
Nominal p-value	0.8222656
FDR q-value	0.9338477
FWER p-Value	1.0

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Mmp2	78	0.847	0.0213	Yes
2	Dst	329	0.654	0.0278	Yes
3	Calu	407	0.618	0.0423	Yes
4	Gpc1	520	0.588	0.0540	Yes
5	Sparc	870	0.515	0.0512	Yes
6	Vcam1	1102	0.478	0.0535	Yes
7	Cadm1	1317	0.451	0.0558	Yes
8	Jun	1406	0.441	0.0645	Yes
9	Col11a1	1572	0.421	0.0685	Yes
10	Timp3	1645	0.415	0.0771	Yes
11	Copa	1718	0.408	0.0856	Yes
12	Efemp2	1885	0.392	0.0887	Yes
13	Rhob	1961	0.384	0.0963	Yes
14	Cdh2	2028	0.377	0.1041	Yes
15	Lama3	2177	0.362	0.1072	Yes
16	Fn1	2366	0.347	0.1078	Yes
17	Fermt2	2427	0.343	0.1150	Yes
18	Thbs2	2491	0.341	0.1219	Yes
19	Anpep	2579	0.334	0.1273	Yes
20	Cap2	2730	0.322	0.1292	Yes
21	Tnfrsf12a	2844	0.312	0.1326	Yes
22	Spock1	2865	0.311	0.1409	Yes
23	Sfrp4	2978	0.304	0.1441	Yes
24	Mest	3030	0.303	0.1505	Yes
25	Fap	3262	0.287	0.1471	Yes
26	Il6	3265	0.286	0.1555	Yes
27	Col5a1	3308	0.283	0.1618	Yes
28	Loxl1	3310	0.283	0.1703	Yes
29	Itga5	3509	0.271	0.1680	Yes
30	Serpinh1	3703	0.258	0.1657	Yes
31	Serpine2	3797	0.252	0.1684	Yes
32	Sgcd	3801	0.252	0.1758	Yes
33	Edil3	3880	0.247	0.1791	Yes
34	Qsox1	4102	0.237	0.1747	Yes
35	Slit3	4152	0.234	0.1791	Yes
36	Sntb1	4166	0.233	0.1854	Yes
37	Col16a1	4219	0.230	0.1896	Yes
38	Ecm2	4309	0.225	0.1917	Yes
39	Mmp14	4376	0.221	0.1949	Yes
40	Fbn2	4498	0.213	0.1949	Yes
41	P3h1	4841	0.195	0.1830	No
42	Sgcb	4909	0.192	0.1852	No
43	Pmepa1	5047	0.184	0.1836	No
44	Lama1	5243	0.176	0.1787	No
45	Plod2	5445	0.168	0.1732	No
46	Tnfaip3	5472	0.166	0.1768	No
47	Fstl1	5669	0.159	0.1714	No
48	Col1a1	5885	0.149	0.1646	No
49	Id2	5900	0.149	0.1684	No
50	Fbln1	5952	0.145	0.1700	No
51	Col4a2	6164	0.134	0.1630	No
52	Slit2	6265	0.129	0.1617	No
53	Magee1	6290	0.128	0.1643	No
54	Col1a2	6305	0.127	0.1674	No
55	Vegfa	6551	0.116	0.1580	No
56	Fzd8	6679	0.109	0.1547	No
57	Lgals1	6708	0.108	0.1565	No
58	Pvr	6767	0.105	0.1566	No
59	Itgb3	6838	0.102	0.1560	No
60	Vegfc	7177	0.086	0.1410	No
61	Tagln	7659	0.066	0.1178	No
62	Itgav	7861	0.058	0.1091	No
63	Wipf1	8122	0.047	0.0969	No
64	Fuca1	8422	0.033	0.0823	No
65	Gja1	8668	0.021	0.0702	No
66	Cdh11	8698	0.020	0.0692	No
67	Gpx7	8777	0.017	0.0657	No
68	Itgb5	9371	-0.003	0.0349	No
69	Col7a1	9454	-0.007	0.0308	No
70	Vcan	9483	-0.008	0.0296	No
71	Tgfbi	9592	-0.013	0.0243	No
72	Plaur	9698	-0.017	0.0194	No
73	Sfrp1	9741	-0.019	0.0177	No
74	Tgfbr3	9804	-0.022	0.0152	No
75	Thy1	9807	-0.022	0.0157	No
76	Dab2	10125	-0.035	0.0002	No
77	Notch2	10184	-0.038	-0.0017	No
78	Cxcl5	10318	-0.044	-0.0073	No
79	Itgb1	10428	-0.048	-0.0116	No
80	Lamc1	10610	-0.055	-0.0194	No
81	Lrp1	10749	-0.060	-0.0248	No
82	Matn2	10899	-0.065	-0.0306	No
83	Sdc1	11237	-0.079	-0.0458	No
84	Fstl3	11381	-0.085	-0.0507	No
85	Dcn	11508	-0.090	-0.0546	No
86	Pcolce	11649	-0.094	-0.0591	No
87	Mylk	11771	-0.100	-0.0624	No
88	Sat1	11774	-0.100	-0.0595	No
89	Tpm4	11899	-0.106	-0.0628	No
90	Nid2	11961	-0.109	-0.0627	No
91	Comp	12274	-0.121	-0.0753	No
92	Adam12	12282	-0.122	-0.0721	No
93	Ntm	12456	-0.130	-0.0772	No
94	Cd44	12511	-0.133	-0.0761	No
95	Tgm2	12955	-0.153	-0.0946	No
96	Nt5e	12988	-0.154	-0.0916	No
97	Slc6a8	13040	-0.156	-0.0896	No
98	Tpm1	13054	-0.157	-0.0856	No
99	Thbs1	13264	-0.167	-0.0915	No
100	Mcm7	13371	-0.171	-0.0919	No
101	Pfn2	13647	-0.184	-0.1007	No
102	Flna	13738	-0.189	-0.0998	No
103	Plod1	13783	-0.191	-0.0964	No
104	Cald1	13944	-0.198	-0.0988	No
105	Tfpi2	14086	-0.206	-0.1000	No
106	Capg	14134	-0.206	-0.0962	No
107	Itga2	14141	-0.206	-0.0904	No
108	Ppib	14198	-0.209	-0.0870	No
109	Myl9	15270	-0.264	-0.1350	No
110	Gadd45b	15284	-0.265	-0.1277	No
111	Abi3bp	15342	-0.269	-0.1226	No
112	Col4a1	15631	-0.285	-0.1291	No
113	Ecm1	15885	-0.300	-0.1333	No
114	Pmp22	16225	-0.322	-0.1414	No
115	Tgfb1	16242	-0.323	-0.1325	No
116	Glipr1	16346	-0.330	-0.1280	No
117	Eno2	17088	-0.385	-0.1552	No
118	Vim	17102	-0.386	-0.1443	No
119	Tpm2	17110	-0.386	-0.1331	No
120	Colgalt1	17505	-0.418	-0.1412	No
121	Fas	17610	-0.428	-0.1338	No
122	Fbn1	17620	-0.429	-0.1214	No
123	Bgn	17744	-0.443	-0.1145	No
124	Igfbp4	17801	-0.450	-0.1040	No
125	Gem	18073	-0.483	-0.1037	No
126	Emp3	18102	-0.488	-0.0905	No
127	Il15	18205	-0.502	-0.0808	No
128	Fgf2	18279	-0.514	-0.0692	No
129	Plod3	18421	-0.536	-0.0605	No
130	Basp1	18466	-0.544	-0.0465	No
131	Gadd45a	18603	-0.572	-0.0365	No
132	Lama2	18612	-0.573	-0.0198	No
133	Bmp1	19074	-0.747	-0.0215	No
134	Pdgfrb	19278	-1.121	0.0015	No