| Dataset | MEP.MEP.mega_Pheno.cls #Group2_versus_Group3.MEP.mega_Pheno.cls #Group2_versus_Group3_repos |
| Phenotype | MEP.mega_Pheno.cls#Group2_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_ESTROGEN_RESPONSE_EARLY |
| Enrichment Score (ES) | -0.21139012 |
| Normalized Enrichment Score (NES) | -0.88652617 |
| Nominal p-value | 0.66202784 |
| FDR q-value | 0.9267785 |
| FWER p-Value | 1.0 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Elovl2 | 38 | 0.862 | 0.0216 | No |
| 2 | Zfp185 | 46 | 0.836 | 0.0440 | No |
| 3 | Thsd4 | 199 | 0.664 | 0.0542 | No |
| 4 | Muc1 | 618 | 0.509 | 0.0463 | No |
| 5 | Slc39a6 | 710 | 0.493 | 0.0550 | No |
| 6 | Tbc1d30 | 831 | 0.468 | 0.0615 | No |
| 7 | Chpt1 | 985 | 0.441 | 0.0656 | No |
| 8 | Mlph | 1144 | 0.418 | 0.0687 | No |
| 9 | Cyp26b1 | 1185 | 0.414 | 0.0779 | No |
| 10 | Slc24a3 | 1293 | 0.403 | 0.0834 | No |
| 11 | Asb13 | 1595 | 0.376 | 0.0779 | No |
| 12 | Kcnk5 | 1685 | 0.366 | 0.0833 | No |
| 13 | Rasgrp1 | 1818 | 0.355 | 0.0860 | No |
| 14 | Fhl2 | 2047 | 0.338 | 0.0834 | No |
| 15 | Fos | 2111 | 0.332 | 0.0891 | No |
| 16 | Podxl | 2222 | 0.324 | 0.0922 | No |
| 17 | Mindy1 | 2239 | 0.323 | 0.1002 | No |
| 18 | Jak2 | 2590 | 0.299 | 0.0901 | No |
| 19 | Aff1 | 2624 | 0.297 | 0.0965 | No |
| 20 | Pgr | 2679 | 0.292 | 0.1016 | No |
| 21 | Dhrs3 | 2739 | 0.288 | 0.1064 | No |
| 22 | Lrig1 | 2749 | 0.287 | 0.1138 | No |
| 23 | Mast4 | 2807 | 0.283 | 0.1185 | No |
| 24 | Rab31 | 2864 | 0.278 | 0.1232 | No |
| 25 | Med13l | 2887 | 0.277 | 0.1296 | No |
| 26 | Inpp5f | 2913 | 0.275 | 0.1358 | No |
| 27 | Rhobtb3 | 3065 | 0.266 | 0.1352 | No |
| 28 | Pdzk1 | 3156 | 0.260 | 0.1376 | No |
| 29 | Bhlhe40 | 3324 | 0.250 | 0.1357 | No |
| 30 | Pmaip1 | 3375 | 0.247 | 0.1398 | No |
| 31 | Mybbp1a | 3925 | 0.216 | 0.1171 | No |
| 32 | Anxa9 | 4249 | 0.202 | 0.1057 | No |
| 33 | Tiparp | 4361 | 0.196 | 0.1053 | No |
| 34 | Il6st | 4406 | 0.194 | 0.1083 | No |
| 35 | Stc2 | 4418 | 0.194 | 0.1130 | No |
| 36 | Akap1 | 4459 | 0.191 | 0.1161 | No |
| 37 | Gja1 | 4748 | 0.177 | 0.1059 | No |
| 38 | Klf10 | 4917 | 0.171 | 0.1018 | No |
| 39 | Sult2b1 | 4980 | 0.167 | 0.1031 | No |
| 40 | Kdm4b | 4997 | 0.166 | 0.1068 | No |
| 41 | Med24 | 5061 | 0.164 | 0.1080 | No |
| 42 | Kazn | 5245 | 0.157 | 0.1027 | No |
| 43 | B4galt1 | 5356 | 0.152 | 0.1011 | No |
| 44 | Mapt | 5407 | 0.150 | 0.1026 | No |
| 45 | Ptges | 5759 | 0.135 | 0.0880 | No |
| 46 | Sec14l2 | 6339 | 0.110 | 0.0607 | No |
| 47 | P2ry2 | 6509 | 0.103 | 0.0547 | No |
| 48 | Snx24 | 6903 | 0.088 | 0.0366 | No |
| 49 | Add3 | 6933 | 0.087 | 0.0374 | No |
| 50 | Svil | 6935 | 0.086 | 0.0398 | No |
| 51 | Adcy9 | 6936 | 0.086 | 0.0421 | No |
| 52 | Greb1 | 6952 | 0.086 | 0.0437 | No |
| 53 | Abca3 | 7080 | 0.081 | 0.0392 | No |
| 54 | Ret | 7203 | 0.075 | 0.0349 | No |
| 55 | Farp1 | 7278 | 0.073 | 0.0330 | No |
| 56 | Rara | 7387 | 0.069 | 0.0293 | No |
| 57 | Elf1 | 7455 | 0.066 | 0.0276 | No |
| 58 | Dynlt3 | 7470 | 0.066 | 0.0287 | No |
| 59 | Tmem164 | 7533 | 0.063 | 0.0272 | No |
| 60 | Elovl5 | 7964 | 0.047 | 0.0060 | No |
| 61 | Abhd2 | 8018 | 0.045 | 0.0044 | No |
| 62 | Slc37a1 | 8022 | 0.045 | 0.0055 | No |
| 63 | Papss2 | 8087 | 0.042 | 0.0033 | No |
| 64 | Bag1 | 8206 | 0.038 | -0.0018 | No |
| 65 | Bcl2 | 8238 | 0.036 | -0.0024 | No |
| 66 | Slc16a1 | 8241 | 0.036 | -0.0016 | No |
| 67 | Slc26a2 | 8277 | 0.035 | -0.0024 | No |
| 68 | Amfr | 8303 | 0.034 | -0.0028 | No |
| 69 | Tgm2 | 8478 | 0.028 | -0.0111 | No |
| 70 | Siah2 | 8991 | 0.009 | -0.0376 | No |
| 71 | Reep1 | 9018 | 0.008 | -0.0388 | No |
| 72 | Nav2 | 9105 | 0.005 | -0.0431 | No |
| 73 | Syngr1 | 9181 | 0.002 | -0.0470 | No |
| 74 | Celsr2 | 9217 | 0.001 | -0.0488 | No |
| 75 | Rrp12 | 9287 | -0.000 | -0.0524 | No |
| 76 | Rab17 | 9301 | -0.001 | -0.0531 | No |
| 77 | Nadsyn1 | 9335 | -0.002 | -0.0547 | No |
| 78 | Mybl1 | 9526 | -0.009 | -0.0644 | No |
| 79 | Krt8 | 9528 | -0.009 | -0.0642 | No |
| 80 | Il17rb | 9597 | -0.011 | -0.0675 | No |
| 81 | Mpped2 | 9743 | -0.015 | -0.0746 | No |
| 82 | Olfm1 | 9799 | -0.017 | -0.0770 | No |
| 83 | Igf1r | 9987 | -0.025 | -0.0861 | No |
| 84 | Endod1 | 10375 | -0.040 | -0.1052 | No |
| 85 | Dlc1 | 10385 | -0.041 | -0.1046 | No |
| 86 | Aldh3b1 | 10399 | -0.041 | -0.1042 | No |
| 87 | Slc7a5 | 10587 | -0.048 | -0.1126 | No |
| 88 | Fkbp5 | 10629 | -0.050 | -0.1134 | No |
| 89 | Hes1 | 10646 | -0.051 | -0.1128 | No |
| 90 | Gab2 | 10673 | -0.052 | -0.1128 | No |
| 91 | Xbp1 | 10804 | -0.056 | -0.1180 | No |
| 92 | Isg20l2 | 10975 | -0.063 | -0.1252 | No |
| 93 | Myof | 11085 | -0.067 | -0.1290 | No |
| 94 | Itpk1 | 11215 | -0.072 | -0.1338 | No |
| 95 | Dhcr7 | 11530 | -0.084 | -0.1479 | No |
| 96 | Cd44 | 11765 | -0.094 | -0.1576 | No |
| 97 | Nrip1 | 11769 | -0.094 | -0.1552 | No |
| 98 | Tiam1 | 11791 | -0.095 | -0.1537 | No |
| 99 | Fkbp4 | 12014 | -0.105 | -0.1624 | No |
| 100 | Klf4 | 12023 | -0.105 | -0.1600 | No |
| 101 | Slc22a5 | 12050 | -0.106 | -0.1584 | No |
| 102 | Myb | 12125 | -0.109 | -0.1593 | No |
| 103 | Blvrb | 12180 | -0.112 | -0.1591 | No |
| 104 | Bcl11b | 12188 | -0.112 | -0.1564 | No |
| 105 | Cbfa2t3 | 12406 | -0.120 | -0.1644 | No |
| 106 | Cish | 12613 | -0.130 | -0.1716 | No |
| 107 | Sfn | 12671 | -0.132 | -0.1710 | No |
| 108 | Ttc39a | 12687 | -0.133 | -0.1682 | No |
| 109 | Ugcg | 12760 | -0.136 | -0.1682 | No |
| 110 | Gfra1 | 12782 | -0.137 | -0.1655 | No |
| 111 | Retreg1 | 12819 | -0.138 | -0.1636 | No |
| 112 | Rbbp8 | 13090 | -0.151 | -0.1736 | No |
| 113 | Rapgefl1 | 13478 | -0.167 | -0.1893 | No |
| 114 | Hspb8 | 13655 | -0.176 | -0.1936 | No |
| 115 | Cant1 | 13714 | -0.178 | -0.1918 | No |
| 116 | Wwc1 | 13886 | -0.186 | -0.1957 | No |
| 117 | Unc119 | 14170 | -0.199 | -0.2050 | No |
| 118 | Egr3 | 14293 | -0.205 | -0.2058 | Yes |
| 119 | Fasn | 14311 | -0.206 | -0.2011 | Yes |
| 120 | Myc | 14460 | -0.214 | -0.2029 | Yes |
| 121 | Foxc1 | 14493 | -0.216 | -0.1987 | Yes |
| 122 | Plaat3 | 14576 | -0.219 | -0.1970 | Yes |
| 123 | Deptor | 14773 | -0.230 | -0.2010 | Yes |
| 124 | Wfs1 | 14832 | -0.233 | -0.1976 | Yes |
| 125 | Opn3 | 14916 | -0.237 | -0.1955 | Yes |
| 126 | Rps6ka2 | 14954 | -0.240 | -0.1909 | Yes |
| 127 | Celsr1 | 14988 | -0.241 | -0.1860 | Yes |
| 128 | Arl3 | 15248 | -0.256 | -0.1926 | Yes |
| 129 | Scnn1a | 15254 | -0.256 | -0.1858 | Yes |
| 130 | Tmprss3 | 15280 | -0.258 | -0.1801 | Yes |
| 131 | Krt18 | 15339 | -0.260 | -0.1760 | Yes |
| 132 | Slc1a4 | 15440 | -0.266 | -0.1740 | Yes |
| 133 | Ncor2 | 15607 | -0.275 | -0.1751 | Yes |
| 134 | Fdft1 | 15826 | -0.288 | -0.1787 | Yes |
| 135 | Sybu | 15931 | -0.296 | -0.1760 | Yes |
| 136 | Tjp3 | 16001 | -0.302 | -0.1714 | Yes |
| 137 | Car12 | 16124 | -0.310 | -0.1693 | Yes |
| 138 | Olfml3 | 16201 | -0.315 | -0.1647 | Yes |
| 139 | Frk | 16326 | -0.324 | -0.1623 | Yes |
| 140 | Scarb1 | 16534 | -0.337 | -0.1639 | Yes |
| 141 | Abat | 16689 | -0.347 | -0.1625 | Yes |
| 142 | Tob1 | 16708 | -0.348 | -0.1539 | Yes |
| 143 | Tgif2 | 17212 | -0.390 | -0.1695 | Yes |
| 144 | Gla | 17224 | -0.392 | -0.1594 | Yes |
| 145 | Rhod | 17367 | -0.402 | -0.1559 | Yes |
| 146 | Slc1a1 | 17406 | -0.406 | -0.1468 | Yes |
| 147 | Ppif | 17479 | -0.412 | -0.1393 | Yes |
| 148 | Clic3 | 17480 | -0.412 | -0.1280 | Yes |
| 149 | Slc2a1 | 17741 | -0.436 | -0.1297 | Yes |
| 150 | Flnb | 17933 | -0.456 | -0.1272 | Yes |
| 151 | Igfbp4 | 17972 | -0.461 | -0.1166 | Yes |
| 152 | Slc7a2 | 17977 | -0.462 | -0.1042 | Yes |
| 153 | Mreg | 18206 | -0.497 | -0.1025 | Yes |
| 154 | Sh3bp5 | 18233 | -0.501 | -0.0902 | Yes |
| 155 | Tpd52l1 | 18259 | -0.504 | -0.0778 | Yes |
| 156 | Nxt1 | 18712 | -0.602 | -0.0849 | Yes |
| 157 | Ablim1 | 18814 | -0.624 | -0.0732 | Yes |
| 158 | Ar | 19051 | -0.740 | -0.0653 | Yes |
| 159 | Slc19a2 | 19199 | -0.862 | -0.0494 | Yes |
| 160 | Pex11a | 19256 | -0.980 | -0.0256 | Yes |
| 161 | Ccnd1 | 19270 | -1.031 | 0.0019 | Yes |

