Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MEP.MEP.mega_Pheno.cls #Group2_versus_Group3.MEP.mega_Pheno.cls #Group2_versus_Group3_repos
Phenotype	MEP.mega_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.33224612
Normalized Enrichment Score (NES)	1.2352036
Nominal p-value	0.025948104
FDR q-value	1.0
FWER p-Value	0.903

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Serpinh1	160	0.686	0.0098	Yes
2	Rhob	172	0.681	0.0273	Yes
3	Itgb3	183	0.674	0.0446	Yes
4	Vcam1	230	0.638	0.0591	Yes
5	Cdh11	255	0.624	0.0744	Yes
6	Tgfbi	271	0.617	0.0899	Yes
7	Fap	409	0.562	0.0977	Yes
8	Sat1	435	0.555	0.1111	Yes
9	Jun	437	0.555	0.1257	Yes
10	Dst	492	0.537	0.1371	Yes
11	Col11a1	535	0.528	0.1489	Yes
12	Tpm4	605	0.510	0.1588	Yes
13	Col16a1	655	0.502	0.1695	Yes
14	Qsox1	672	0.498	0.1819	Yes
15	Nt5e	764	0.478	0.1898	Yes
16	Plaur	827	0.469	0.1990	Yes
17	Col4a2	830	0.468	0.2113	Yes
18	Ecm1	852	0.464	0.2225	Yes
19	Mmp2	916	0.452	0.2312	Yes
20	Mest	1082	0.426	0.2339	Yes
21	Itga2	1095	0.424	0.2445	Yes
22	Plod2	1228	0.410	0.2484	Yes
23	Mylk	1234	0.410	0.2590	Yes
24	Tnfaip3	1239	0.409	0.2696	Yes
25	Myl9	1254	0.408	0.2797	Yes
26	Thbs1	1289	0.403	0.2886	Yes
27	Sfrp4	1356	0.397	0.2957	Yes
28	Cald1	1403	0.393	0.3037	Yes
29	Tnfrsf12a	1599	0.376	0.3035	Yes
30	Matn2	1608	0.375	0.3130	Yes
31	Tpm1	1681	0.366	0.3189	Yes
32	Ecm2	1815	0.355	0.3214	Yes
33	Il6	2038	0.339	0.3188	Yes
34	Fn1	2100	0.332	0.3244	Yes
35	Itgb5	2119	0.331	0.3322	Yes
36	Timp3	2493	0.305	0.3209	No
37	P3h1	2587	0.299	0.3239	No
38	Adam12	2928	0.274	0.3135	No
39	Sparc	3111	0.264	0.3109	No
40	Itgb1	3140	0.261	0.3164	No
41	Itga5	3213	0.257	0.3195	No
42	Slit3	3217	0.256	0.3261	No
43	Pvr	3501	0.240	0.3177	No
44	Magee1	3719	0.228	0.3124	No
45	Calu	3778	0.224	0.3153	No
46	Sgcb	4449	0.192	0.2854	No
47	Sgcd	4468	0.190	0.2895	No
48	Gpc1	4485	0.190	0.2937	No
49	Dcn	4547	0.186	0.2955	No
50	Copa	4554	0.186	0.3001	No
51	Id2	4642	0.182	0.3003	No
52	Wipf1	4658	0.181	0.3044	No
53	Gja1	4748	0.177	0.3044	No
54	Itgav	4749	0.177	0.3091	No
55	Serpine2	4922	0.170	0.3046	No
56	Tagln	4946	0.169	0.3079	No
57	Cxcl5	5085	0.162	0.3050	No
58	Vegfc	5203	0.159	0.3031	No
59	Flna	5553	0.144	0.2887	No
60	Slc6a8	5645	0.140	0.2877	No
61	Lamc1	5706	0.138	0.2882	No
62	Cdh2	5843	0.132	0.2846	No
63	Col7a1	6112	0.119	0.2738	No
64	Col4a1	6149	0.118	0.2750	No
65	Cap2	6191	0.115	0.2759	No
66	Gadd45a	6278	0.112	0.2744	No
67	Pfn2	6527	0.102	0.2642	No
68	Pmp22	6887	0.088	0.2478	No
69	Vcan	6938	0.086	0.2475	No
70	Notch2	7208	0.075	0.2354	No
71	Col1a1	7258	0.073	0.2348	No
72	Fermt2	7631	0.059	0.2170	No
73	Lrp1	7769	0.055	0.2113	No
74	Tgm2	8478	0.028	0.1751	No
75	Fuca1	8866	0.014	0.1553	No
76	Sntb1	9118	0.004	0.1423	No
77	Thbs2	10291	-0.036	0.0821	No
78	Slit2	10346	-0.039	0.0803	No
79	Vegfa	10517	-0.046	0.0727	No
80	Col1a2	10604	-0.049	0.0695	No
81	Col5a1	10645	-0.051	0.0688	No
82	Gpx7	10722	-0.053	0.0662	No
83	Ntm	10727	-0.053	0.0674	No
84	Fbn2	10870	-0.059	0.0616	No
85	Dab2	11310	-0.076	0.0407	No
86	Fstl1	11727	-0.092	0.0214	No
87	Cd44	11765	-0.094	0.0220	No
88	Tgfbr3	12016	-0.105	0.0117	No
89	Pmepa1	12530	-0.126	-0.0117	No
90	Efemp2	12590	-0.129	-0.0114	No
91	Cadm1	12644	-0.131	-0.0107	No
92	Fzd8	12668	-0.132	-0.0084	No
93	Mmp14	12737	-0.136	-0.0083	No
94	Mcm7	12812	-0.138	-0.0085	No
95	Ppib	12946	-0.145	-0.0116	No
96	Fstl3	13096	-0.152	-0.0154	No
97	Comp	13196	-0.156	-0.0164	No
98	Plod3	13204	-0.156	-0.0127	No
99	Sfrp1	13281	-0.159	-0.0124	No
100	Tpm2	13368	-0.163	-0.0126	No
101	Thy1	13446	-0.165	-0.0122	No
102	Spock1	13455	-0.166	-0.0083	No
103	Fbln1	13647	-0.175	-0.0136	No
104	Tgfb1	13699	-0.178	-0.0115	No
105	Eno2	13738	-0.179	-0.0088	No
106	Fas	14366	-0.209	-0.0359	No
107	Fbn1	14542	-0.217	-0.0393	No
108	Pcolce	14556	-0.218	-0.0342	No
109	Bmp1	14578	-0.219	-0.0295	No
110	Lgals1	14782	-0.230	-0.0340	No
111	Gadd45b	15368	-0.262	-0.0576	No
112	Abi3bp	15519	-0.270	-0.0583	No
113	Sdc1	15970	-0.299	-0.0738	No
114	Vim	16084	-0.307	-0.0715	No
115	Loxl1	16166	-0.313	-0.0675	No
116	Lama1	16181	-0.314	-0.0599	No
117	Tfpi2	16193	-0.314	-0.0522	No
118	Anpep	16372	-0.327	-0.0528	No
119	Basp1	16663	-0.345	-0.0588	No
120	Il15	16799	-0.355	-0.0565	No
121	Glipr1	16834	-0.358	-0.0487	No
122	Capg	16981	-0.370	-0.0466	No
123	Colgalt1	17530	-0.416	-0.0641	No
124	Plod1	17601	-0.423	-0.0566	No
125	Lama2	17850	-0.447	-0.0577	No
126	Igfbp4	17972	-0.461	-0.0518	No
127	Lama3	18103	-0.481	-0.0458	No
128	Bgn	18119	-0.483	-0.0338	No
129	Pdgfrb	18246	-0.503	-0.0271	No
130	Emp3	18303	-0.513	-0.0164	No
131	Gem	18468	-0.546	-0.0105	No
132	Nid2	18756	-0.612	-0.0093	No
133	Fgf2	18995	-0.701	-0.0031	No
134	Edil3	19032	-0.730	0.0143	No