| Dataset | MEP.MEP.mega_Pheno.cls #Group2_versus_Group3.MEP.mega_Pheno.cls #Group2_versus_Group3_repos |
| Phenotype | MEP.mega_Pheno.cls#Group2_versus_Group3_repos |
| Upregulated in class | 2 |
| GeneSet | HALLMARK_E2F_TARGETS |
| Enrichment Score (ES) | -0.27992725 |
| Normalized Enrichment Score (NES) | -0.94996715 |
| Nominal p-value | 0.4958159 |
| FDR q-value | 0.84657884 |
| FWER p-Value | 0.996 |

| SYMBOL | RANK IN GENE LIST | RANK METRIC SCORE | RUNNING ES | CORE ENRICHMENT | |
|---|---|---|---|---|---|
| 1 | Donson | 901 | 0.454 | -0.0356 | No |
| 2 | Srsf1 | 932 | 0.451 | -0.0258 | No |
| 3 | Dck | 1059 | 0.430 | -0.0215 | No |
| 4 | Zw10 | 1198 | 0.413 | -0.0182 | No |
| 5 | Tfrc | 1649 | 0.369 | -0.0324 | No |
| 6 | Ipo7 | 1803 | 0.356 | -0.0314 | No |
| 7 | Bub1b | 1879 | 0.350 | -0.0264 | No |
| 8 | Lmnb1 | 2006 | 0.342 | -0.0244 | No |
| 9 | Dlgap5 | 2088 | 0.334 | -0.0201 | No |
| 10 | Lsm8 | 2272 | 0.321 | -0.0216 | No |
| 11 | Aurka | 2385 | 0.312 | -0.0195 | No |
| 12 | Hnrnpd | 2710 | 0.289 | -0.0291 | No |
| 13 | Smc3 | 2782 | 0.284 | -0.0256 | No |
| 14 | Dnmt1 | 2904 | 0.276 | -0.0250 | No |
| 15 | Pcna | 2984 | 0.271 | -0.0223 | No |
| 16 | Cdkn1b | 3003 | 0.270 | -0.0164 | No |
| 17 | Ilf3 | 3005 | 0.270 | -0.0096 | No |
| 18 | Mlh1 | 3586 | 0.235 | -0.0340 | No |
| 19 | Chek2 | 3694 | 0.229 | -0.0337 | No |
| 20 | Prps1 | 3929 | 0.216 | -0.0405 | No |
| 21 | Plk1 | 3981 | 0.214 | -0.0378 | No |
| 22 | Ncapd2 | 4040 | 0.212 | -0.0354 | No |
| 23 | Ccp110 | 4053 | 0.211 | -0.0307 | No |
| 24 | Rad21 | 4167 | 0.206 | -0.0314 | No |
| 25 | Xpo1 | 4355 | 0.197 | -0.0362 | No |
| 26 | Hus1 | 4408 | 0.194 | -0.0340 | No |
| 27 | Psmc3ip | 4458 | 0.191 | -0.0317 | No |
| 28 | Cdkn2c | 4507 | 0.188 | -0.0294 | No |
| 29 | Cdc25a | 4632 | 0.182 | -0.0313 | No |
| 30 | Depdc1a | 4757 | 0.177 | -0.0333 | No |
| 31 | Brms1l | 4820 | 0.175 | -0.0321 | No |
| 32 | Pnn | 4842 | 0.174 | -0.0288 | No |
| 33 | Mre11a | 5011 | 0.166 | -0.0334 | No |
| 34 | Nasp | 5147 | 0.161 | -0.0364 | No |
| 35 | Lbr | 5161 | 0.160 | -0.0330 | No |
| 36 | Atad2 | 5172 | 0.160 | -0.0295 | No |
| 37 | Brca1 | 5208 | 0.158 | -0.0273 | No |
| 38 | Xrcc6 | 5227 | 0.157 | -0.0242 | No |
| 39 | Anp32e | 5354 | 0.152 | -0.0270 | No |
| 40 | Racgap1 | 5378 | 0.151 | -0.0244 | No |
| 41 | Msh2 | 5392 | 0.151 | -0.0212 | No |
| 42 | Phf5a | 5537 | 0.145 | -0.0251 | No |
| 43 | Rpa1 | 5727 | 0.137 | -0.0315 | No |
| 44 | Syncrip | 5830 | 0.132 | -0.0335 | No |
| 45 | Melk | 5996 | 0.125 | -0.0390 | No |
| 46 | Gins3 | 6335 | 0.110 | -0.0539 | No |
| 47 | Eif2s1 | 6492 | 0.103 | -0.0594 | No |
| 48 | Smc1a | 6652 | 0.098 | -0.0652 | No |
| 49 | Prkdc | 6810 | 0.091 | -0.0711 | No |
| 50 | Nolc1 | 6853 | 0.089 | -0.0711 | No |
| 51 | Lyar | 6923 | 0.087 | -0.0725 | No |
| 52 | Slbp | 6975 | 0.085 | -0.0730 | No |
| 53 | Nudt21 | 6995 | 0.084 | -0.0719 | No |
| 54 | Shmt1 | 7028 | 0.083 | -0.0714 | No |
| 55 | Kif2c | 7043 | 0.082 | -0.0701 | No |
| 56 | Nap1l1 | 7071 | 0.081 | -0.0695 | No |
| 57 | Nup107 | 7120 | 0.079 | -0.0700 | No |
| 58 | Top2a | 7161 | 0.077 | -0.0701 | No |
| 59 | Cdk1 | 7168 | 0.077 | -0.0685 | No |
| 60 | Mcm6 | 7328 | 0.071 | -0.0750 | No |
| 61 | Mcm2 | 7373 | 0.069 | -0.0755 | No |
| 62 | Prim2 | 7410 | 0.068 | -0.0757 | No |
| 63 | Wdr90 | 7641 | 0.059 | -0.0862 | No |
| 64 | Aurkb | 7649 | 0.059 | -0.0851 | No |
| 65 | Luc7l3 | 7745 | 0.055 | -0.0887 | No |
| 66 | Stag1 | 7763 | 0.055 | -0.0882 | No |
| 67 | Birc5 | 7813 | 0.053 | -0.0894 | No |
| 68 | Lig1 | 7840 | 0.053 | -0.0894 | No |
| 69 | Plk4 | 7901 | 0.050 | -0.0913 | No |
| 70 | Kif22 | 7903 | 0.050 | -0.0901 | No |
| 71 | Ubr7 | 7954 | 0.048 | -0.0915 | No |
| 72 | Nup153 | 7976 | 0.047 | -0.0914 | No |
| 73 | Cse1l | 8166 | 0.039 | -0.1003 | No |
| 74 | Ssrp1 | 8264 | 0.036 | -0.1045 | No |
| 75 | Ak2 | 8355 | 0.032 | -0.1083 | No |
| 76 | Hmmr | 8426 | 0.029 | -0.1113 | No |
| 77 | Diaph3 | 8477 | 0.028 | -0.1132 | No |
| 78 | Tmpo | 8669 | 0.021 | -0.1226 | No |
| 79 | Ran | 8713 | 0.019 | -0.1244 | No |
| 80 | Nup205 | 8830 | 0.015 | -0.1301 | No |
| 81 | Hmgb3 | 8860 | 0.014 | -0.1313 | No |
| 82 | Kif4 | 8968 | 0.010 | -0.1366 | No |
| 83 | Mms22l | 8979 | 0.010 | -0.1369 | No |
| 84 | Pds5b | 9154 | 0.003 | -0.1459 | No |
| 85 | Hmga1b | 9225 | 0.000 | -0.1496 | No |
| 86 | Pold3 | 9473 | -0.006 | -0.1623 | No |
| 87 | Jpt1 | 9535 | -0.009 | -0.1653 | No |
| 88 | Cenpe | 9546 | -0.009 | -0.1656 | No |
| 89 | Cit | 9577 | -0.010 | -0.1669 | No |
| 90 | Ezh2 | 9825 | -0.018 | -0.1793 | No |
| 91 | Nbn | 9976 | -0.025 | -0.1866 | No |
| 92 | Brca2 | 10099 | -0.029 | -0.1922 | No |
| 93 | Pan2 | 10124 | -0.030 | -0.1927 | No |
| 94 | Ube2t | 10164 | -0.031 | -0.1940 | No |
| 95 | Orc2 | 10377 | -0.040 | -0.2040 | No |
| 96 | Paics | 10400 | -0.041 | -0.2041 | No |
| 97 | Tra2b | 10779 | -0.055 | -0.2225 | No |
| 98 | Dut | 10836 | -0.058 | -0.2240 | No |
| 99 | Cdca8 | 10895 | -0.060 | -0.2255 | No |
| 100 | Wee1 | 10903 | -0.060 | -0.2244 | No |
| 101 | Ddx39a | 10935 | -0.061 | -0.2244 | No |
| 102 | Trp53 | 10976 | -0.063 | -0.2249 | No |
| 103 | Espl1 | 10992 | -0.064 | -0.2241 | No |
| 104 | Eed | 11020 | -0.065 | -0.2239 | No |
| 105 | Snrpb | 11024 | -0.065 | -0.2224 | No |
| 106 | Spc25 | 11068 | -0.067 | -0.2230 | No |
| 107 | H2az1 | 11082 | -0.067 | -0.2219 | No |
| 108 | Rbbp7 | 11227 | -0.073 | -0.2276 | No |
| 109 | Mcm3 | 11266 | -0.074 | -0.2277 | No |
| 110 | Cks2 | 11528 | -0.084 | -0.2393 | No |
| 111 | Pa2g4 | 11553 | -0.085 | -0.2384 | No |
| 112 | Psip1 | 11597 | -0.086 | -0.2384 | No |
| 113 | Tacc3 | 11659 | -0.089 | -0.2394 | No |
| 114 | Cbx5 | 11692 | -0.091 | -0.2388 | No |
| 115 | Mybl2 | 11694 | -0.091 | -0.2365 | No |
| 116 | Suv39h1 | 11745 | -0.093 | -0.2368 | No |
| 117 | Tbrg4 | 11858 | -0.098 | -0.2401 | No |
| 118 | Orc6 | 11877 | -0.099 | -0.2386 | No |
| 119 | Smc4 | 11885 | -0.099 | -0.2364 | No |
| 120 | Rad50 | 11893 | -0.100 | -0.2343 | No |
| 121 | Exosc8 | 11994 | -0.104 | -0.2368 | No |
| 122 | Ppp1r8 | 12040 | -0.106 | -0.2365 | No |
| 123 | Hmgb2 | 12059 | -0.107 | -0.2348 | No |
| 124 | Spag5 | 12297 | -0.115 | -0.2442 | No |
| 125 | Ppm1d | 12336 | -0.118 | -0.2432 | No |
| 126 | Gspt1 | 12405 | -0.120 | -0.2437 | No |
| 127 | Smc6 | 12413 | -0.121 | -0.2410 | No |
| 128 | Bard1 | 12614 | -0.130 | -0.2482 | No |
| 129 | E2f8 | 12683 | -0.133 | -0.2484 | No |
| 130 | Mcm7 | 12812 | -0.138 | -0.2516 | No |
| 131 | Chek1 | 12854 | -0.140 | -0.2502 | No |
| 132 | Pole | 12924 | -0.144 | -0.2502 | No |
| 133 | Mcm5 | 13069 | -0.150 | -0.2539 | No |
| 134 | Rad51c | 13113 | -0.152 | -0.2523 | No |
| 135 | Tk1 | 13377 | -0.163 | -0.2619 | No |
| 136 | Mcm4 | 13418 | -0.164 | -0.2598 | No |
| 137 | Mki67 | 13557 | -0.170 | -0.2627 | No |
| 138 | Usp1 | 13603 | -0.173 | -0.2607 | No |
| 139 | Ccne1 | 13815 | -0.181 | -0.2671 | No |
| 140 | Mad2l1 | 13854 | -0.184 | -0.2644 | No |
| 141 | Mthfd2 | 14128 | -0.197 | -0.2737 | No |
| 142 | Ube2s | 14135 | -0.197 | -0.2690 | No |
| 143 | Pola2 | 14309 | -0.206 | -0.2729 | No |
| 144 | Rfc1 | 14445 | -0.214 | -0.2745 | Yes |
| 145 | Myc | 14460 | -0.214 | -0.2698 | Yes |
| 146 | Cdc25b | 14464 | -0.214 | -0.2645 | Yes |
| 147 | Rrm2 | 14486 | -0.216 | -0.2602 | Yes |
| 148 | Pold1 | 14587 | -0.220 | -0.2598 | Yes |
| 149 | Trip13 | 14616 | -0.221 | -0.2557 | Yes |
| 150 | Cdkn1a | 14702 | -0.226 | -0.2544 | Yes |
| 151 | Pms2 | 14768 | -0.230 | -0.2520 | Yes |
| 152 | Ctcf | 14792 | -0.231 | -0.2473 | Yes |
| 153 | Nop56 | 14805 | -0.231 | -0.2421 | Yes |
| 154 | Rnaseh2a | 14806 | -0.231 | -0.2362 | Yes |
| 155 | Nme1 | 14860 | -0.234 | -0.2331 | Yes |
| 156 | Asf1a | 14952 | -0.239 | -0.2317 | Yes |
| 157 | Dek | 15195 | -0.253 | -0.2380 | Yes |
| 158 | Dclre1b | 15355 | -0.262 | -0.2397 | Yes |
| 159 | Cdk4 | 15379 | -0.263 | -0.2342 | Yes |
| 160 | Ranbp1 | 15597 | -0.274 | -0.2386 | Yes |
| 161 | Cnot9 | 15694 | -0.279 | -0.2366 | Yes |
| 162 | Tubb5 | 15748 | -0.283 | -0.2322 | Yes |
| 163 | Pold2 | 16087 | -0.308 | -0.2420 | Yes |
| 164 | Cenpm | 16274 | -0.320 | -0.2437 | Yes |
| 165 | Tcf19 | 16299 | -0.322 | -0.2368 | Yes |
| 166 | Asf1b | 16321 | -0.323 | -0.2297 | Yes |
| 167 | Ccnb2 | 16414 | -0.329 | -0.2261 | Yes |
| 168 | Tipin | 16563 | -0.338 | -0.2253 | Yes |
| 169 | Rad51ap1 | 16719 | -0.349 | -0.2246 | Yes |
| 170 | Gins4 | 16771 | -0.353 | -0.2183 | Yes |
| 171 | Kif18b | 16893 | -0.363 | -0.2154 | Yes |
| 172 | Timeless | 16940 | -0.367 | -0.2086 | Yes |
| 173 | H2ax | 16969 | -0.368 | -0.2007 | Yes |
| 174 | Srsf2 | 17013 | -0.374 | -0.1935 | Yes |
| 175 | Stmn1 | 17015 | -0.374 | -0.1840 | Yes |
| 176 | Spc24 | 17074 | -0.378 | -0.1775 | Yes |
| 177 | Hells | 17134 | -0.384 | -0.1708 | Yes |
| 178 | Prdx4 | 17273 | -0.396 | -0.1680 | Yes |
| 179 | Cks1b | 17434 | -0.408 | -0.1660 | Yes |
| 180 | Cdc20 | 17529 | -0.416 | -0.1604 | Yes |
| 181 | Dctpp1 | 17666 | -0.428 | -0.1567 | Yes |
| 182 | Tubg1 | 17964 | -0.460 | -0.1605 | Yes |
| 183 | Cdkn3 | 18049 | -0.473 | -0.1529 | Yes |
| 184 | Rfc2 | 18111 | -0.483 | -0.1439 | Yes |
| 185 | Rad1 | 18245 | -0.503 | -0.1381 | Yes |
| 186 | Rfc3 | 18250 | -0.504 | -0.1255 | Yes |
| 187 | Rpa3 | 18260 | -0.505 | -0.1132 | Yes |
| 188 | Pttg1 | 18311 | -0.516 | -0.1027 | Yes |
| 189 | Gins1 | 18398 | -0.533 | -0.0937 | Yes |
| 190 | Rpa2 | 18406 | -0.535 | -0.0805 | Yes |
| 191 | Ung | 18442 | -0.542 | -0.0686 | Yes |
| 192 | Dscc1 | 18482 | -0.549 | -0.0567 | Yes |
| 193 | Ing3 | 18487 | -0.549 | -0.0430 | Yes |
| 194 | Pop7 | 18563 | -0.569 | -0.0325 | Yes |
| 195 | Mxd3 | 18734 | -0.605 | -0.0261 | Yes |
| 196 | Cdkn2a | 18755 | -0.611 | -0.0116 | Yes |
| 197 | Pole4 | 19066 | -0.748 | -0.0089 | Yes |
| 198 | Cdca3 | 19183 | -0.845 | 0.0065 | Yes |

