Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	MEP.MEP.mega_Pheno.cls #Group2_versus_Group3.MEP.mega_Pheno.cls #Group2_versus_Group3_repos
Phenotype	MEP.mega_Pheno.cls#Group2_versus_Group3_repos
Upregulated in class	1
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	0.25093696
Normalized Enrichment Score (NES)	1.1168631
Nominal p-value	0.25742576
FDR q-value	0.68740517
FWER p-Value	0.972

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Pea15a	81	0.764	0.0186	Yes
2	Aifm3	125	0.717	0.0377	Yes
3	Rhob	172	0.681	0.0556	Yes
4	Gstm2	204	0.659	0.0737	Yes
5	Il1a	329	0.593	0.0849	Yes
6	Sptan1	373	0.576	0.0999	Yes
7	Casp4	423	0.559	0.1140	Yes
8	Sat1	435	0.555	0.1300	Yes
9	Jun	437	0.555	0.1465	Yes
10	Clu	875	0.459	0.1374	Yes
11	Mmp2	916	0.452	0.1489	Yes
12	Atf3	1187	0.414	0.1471	Yes
13	Nefh	1200	0.413	0.1588	Yes
14	Mcl1	1247	0.409	0.1686	Yes
15	Madd	1489	0.386	0.1676	Yes
16	Tnfrsf12a	1599	0.376	0.1731	Yes
17	Ppt1	1804	0.356	0.1731	Yes
18	Cyld	1840	0.353	0.1818	Yes
19	Bmp2	1873	0.350	0.1906	Yes
20	Bcl2l1	1929	0.347	0.1981	Yes
21	Il6	2038	0.339	0.2025	Yes
22	Ppp3r1	2127	0.331	0.2078	Yes
23	Timp3	2493	0.305	0.1979	Yes
24	Smad7	2697	0.290	0.1960	Yes
25	Satb1	2719	0.289	0.2035	Yes
26	Slc20a1	2772	0.285	0.2093	Yes
27	Tgfb2	2892	0.276	0.2113	Yes
28	Cdkn1b	3003	0.270	0.2137	Yes
29	Gsn	3004	0.270	0.2217	Yes
30	Dnm1l	3009	0.269	0.2295	Yes
31	Il1b	3038	0.268	0.2361	Yes
32	Dap	3099	0.264	0.2408	Yes
33	Lmna	3165	0.260	0.2452	Yes
34	Fdxr	3203	0.257	0.2509	Yes
35	Pmaip1	3375	0.247	0.2494	No
36	Btg2	3485	0.241	0.2509	No
37	Ppp2r5b	3651	0.231	0.2492	No
38	Cd69	3845	0.220	0.2457	No
39	Birc3	4505	0.189	0.2169	No
40	Dcn	4547	0.186	0.2203	No
41	Txnip	4964	0.168	0.2037	No
42	Dffa	4974	0.168	0.2082	No
43	Bmf	4993	0.167	0.2122	No
44	Psen2	5008	0.166	0.2165	No
45	Casp6	5149	0.161	0.2139	No
46	Psen1	5168	0.160	0.2178	No
47	Brca1	5208	0.158	0.2205	No
48	Crebbp	5406	0.150	0.2147	No
49	Diablo	5588	0.143	0.2095	No
50	Btg3	5625	0.141	0.2118	No
51	Pak1	5680	0.138	0.2131	No
52	Gsr	5825	0.132	0.2096	No
53	Bik	5848	0.131	0.2124	No
54	Ptk2	5967	0.126	0.2100	No
55	Xiap	5987	0.125	0.2127	No
56	Hmox1	6069	0.121	0.2121	No
57	Retsat	6076	0.120	0.2154	No
58	Casp8	6085	0.120	0.2185	No
59	Gadd45a	6278	0.112	0.2119	No
60	Cav1	6643	0.098	0.1958	No
61	Rnasel	6649	0.098	0.1984	No
62	Cdk2	6722	0.095	0.1975	No
63	Bcap31	6835	0.090	0.1944	No
64	Cflar	6872	0.089	0.1951	No
65	Pdcd4	6916	0.087	0.1955	No
66	Etf1	6931	0.087	0.1973	No
67	Bcl2l2	7001	0.083	0.1962	No
68	Top2a	7161	0.077	0.1902	No
69	Rara	7387	0.069	0.1806	No
70	Casp2	7605	0.060	0.1710	No
71	Bnip3l	7965	0.047	0.1537	No
72	Il18	8027	0.044	0.1519	No
73	Dpyd	8034	0.044	0.1529	No
74	App	9409	-0.005	0.0813	No
75	Igf2r	9493	-0.007	0.0772	No
76	Lgals3	9702	-0.014	0.0668	No
77	Ebp	9791	-0.017	0.0627	No
78	Add1	9876	-0.020	0.0589	No
79	Irf1	10147	-0.031	0.0457	No
80	Ifngr1	10182	-0.032	0.0449	No
81	Ier3	10398	-0.041	0.0349	No
82	Ank	10749	-0.054	0.0183	No
83	Wee1	10903	-0.060	0.0121	No
84	Lef1	10983	-0.063	0.0098	No
85	Isg20	11043	-0.066	0.0087	No
86	Mgmt	11104	-0.068	0.0076	No
87	Cth	11162	-0.070	0.0068	No
88	Casp3	11534	-0.084	-0.0101	No
89	Hgf	11612	-0.087	-0.0115	No
90	Dap3	11712	-0.092	-0.0139	No
91	Cd44	11765	-0.094	-0.0138	No
92	Bcl10	11818	-0.096	-0.0137	No
93	Casp1	11844	-0.097	-0.0121	No
94	Sod2	11918	-0.100	-0.0129	No
95	Rhot2	11944	-0.102	-0.0112	No
96	Tgfbr3	12016	-0.105	-0.0117	No
97	Hmgb2	12059	-0.107	-0.0107	No
98	Sod1	12072	-0.108	-0.0081	No
99	Ddit3	12116	-0.109	-0.0071	No
100	Rock1	12229	-0.113	-0.0096	No
101	Ctnnb1	12258	-0.114	-0.0076	No
102	Ifitm3	12396	-0.120	-0.0112	No
103	Bcl2l11	12706	-0.134	-0.0233	No
104	Dnajc3	12831	-0.139	-0.0256	No
105	Tspo	12835	-0.139	-0.0216	No
106	Erbb3	13003	-0.148	-0.0259	No
107	Dnaja1	13093	-0.152	-0.0261	No
108	Cd38	13203	-0.156	-0.0271	No
109	Gpx3	13211	-0.157	-0.0228	No
110	Igfbp6	13229	-0.157	-0.0190	No
111	Sc5d	13412	-0.164	-0.0236	No
112	Sqstm1	13467	-0.166	-0.0214	No
113	F2	13615	-0.174	-0.0239	No
114	Eno2	13738	-0.179	-0.0249	No
115	Nedd9	13850	-0.184	-0.0252	No
116	Tnfsf10	14035	-0.193	-0.0291	No
117	Rela	14062	-0.194	-0.0246	No
118	Bid	14115	-0.197	-0.0215	No
119	Egr3	14293	-0.205	-0.0246	No
120	Fas	14366	-0.209	-0.0221	No
121	Cdc25b	14464	-0.214	-0.0208	No
122	Plcb2	14647	-0.223	-0.0236	No
123	Cdkn1a	14702	-0.226	-0.0197	No
124	Gch1	14730	-0.227	-0.0143	No
125	Gpx4	15131	-0.248	-0.0278	No
126	Bax	15178	-0.252	-0.0226	No
127	Krt18	15339	-0.260	-0.0232	No
128	Gadd45b	15368	-0.262	-0.0169	No
129	Gpx1	15410	-0.264	-0.0111	No
130	F2r	15459	-0.267	-0.0056	No
131	Casp7	15719	-0.281	-0.0107	No
132	H1f0	15750	-0.283	-0.0039	No
133	Tap1	15972	-0.300	-0.0064	No
134	Casp9	16059	-0.306	-0.0018	No
135	Gna15	16061	-0.306	0.0073	No
136	Ccnd2	17002	-0.372	-0.0307	No
137	Vdac2	17733	-0.436	-0.0557	No
138	Bgn	18119	-0.483	-0.0614	No
139	Pdgfrb	18246	-0.503	-0.0530	No
140	Anxa1	18569	-0.569	-0.0528	No
141	Tnf	19253	-0.972	-0.0594	No
142	Ccnd1	19270	-1.031	-0.0294	No
143	Timp2	19275	-1.048	0.0017	No