DatasetMEP.MEP.mega_Pheno.cls
#Group1_versus_Group4.MEP.mega_Pheno.cls
#Group1_versus_Group4_repos
PhenotypeMEP.mega_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class3
GeneSetHALLMARK_INTERFERON_GAMMA_RESPONSE
Enrichment Score (ES)-0.4558726
Normalized Enrichment Score (NES)-1.5315146
Nominal p-value0.06896552
FDR q-value0.17668603
FWER p-Value0.308
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Il10ra2030.7420.0054No
2Vcam15200.5990.0018No
3Cfb6720.5600.0059No
4Ncoa311770.474-0.0102No
5Trim2616630.409-0.0267No
6Rnf3123520.350-0.0551No
7Ube2l624330.343-0.0519No
8Hif1a27970.316-0.0641No
9Sspn29150.307-0.0635No
10Mx231080.296-0.0672No
11Lap331640.293-0.0638No
12Ifit236230.262-0.0820No
13Lats236840.258-0.0796No
14Trim2137100.257-0.0754No
15Fcgr141350.232-0.0926No
16Adar46140.209-0.1131No
17Marchf148460.197-0.1209No
18Cmtr148950.194-0.1192No
19Nod150280.189-0.1220No
20Rapgef653000.177-0.1324No
21Jak257550.152-0.1528No
22Ripk158020.150-0.1520No
23St8sia459280.143-0.1554No
24Il4ra60710.136-0.1599No
25Samhd161380.133-0.1605No
26Tdrd762410.129-0.1631No
27Slc25a2863830.123-0.1678No
28Cd8663930.123-0.1656No
29Lysmd264060.122-0.1636No
30Znfx164620.120-0.1639No
31Nampt69250.104-0.1858No
32Wars169930.101-0.1871No
33Eif2ak270830.097-0.1897No
34Nup9371960.091-0.1936No
35Socs373280.085-0.1986No
36Txnip73300.084-0.1968No
37Gbp375280.076-0.2055No
38Ciita75580.075-0.2054No
39Cmklr178030.063-0.2168No
40Ripk279710.055-0.2243No
41Usp1881170.049-0.2308No
42Ptpn281340.049-0.2306No
43Pim181730.047-0.2316No
44Fgl282010.046-0.2320No
45Pfkp83310.040-0.2379No
46Plscr183870.038-0.2400No
47Irf786680.027-0.2540No
48Cdkn1a87570.023-0.2581No
49Rigi89360.016-0.2671No
50Ptpn189460.015-0.2672No
51Parp1490050.013-0.2700No
52Stat391020.008-0.2748No
53Btg191760.005-0.2785No
54Mvp92510.002-0.2823No
55Rbck19408-0.001-0.2905No
56Tnfsf109631-0.009-0.3019No
57Rnf2139763-0.014-0.3084No
58Casp89785-0.016-0.3092No
59Samd9l10013-0.028-0.3204No
60Cd3810194-0.036-0.3291No
61Myd8810299-0.041-0.3336No
62H2-Aa10385-0.044-0.3371No
63Selp10582-0.052-0.3462No
64Casp710616-0.053-0.3468No
65Cd27410699-0.057-0.3499No
66Stat111045-0.073-0.3663No
67Auts211110-0.075-0.3680No
68Ifih111119-0.076-0.3668No
69Cxcl1011136-0.077-0.3660No
70Irf211414-0.090-0.3786No
71Sri11498-0.094-0.3809No
72Socs111883-0.111-0.3985No
73Helz211914-0.113-0.3977No
74Lcp211949-0.114-0.3970No
75Epsti112027-0.117-0.3985No
76Trim1412053-0.118-0.3973No
77Tapbp12176-0.123-0.4010No
78Rsad212293-0.128-0.4043No
79Pnpt112361-0.131-0.4050No
80Ifit312396-0.132-0.4039No
81Il15ra12436-0.133-0.4031No
82Pla2g4a12485-0.136-0.4027No
83Dhx5812495-0.136-0.4002No
84Psme212630-0.142-0.4042No
85Herc612705-0.145-0.4049No
86Tor1b12731-0.146-0.4031No
87Stat412787-0.149-0.4027No
88Arl4a12800-0.150-0.4001No
89Il1512886-0.153-0.4013No
90Il713011-0.158-0.4043No
91Psma313044-0.160-0.4026No
92Pml13171-0.166-0.4056No
93Cmpk213267-0.169-0.4069No
94Pde4b13468-0.177-0.4135No
95Arid5b13489-0.178-0.4107No
96Casp413642-0.185-0.4147No
97Psmb1013822-0.193-0.4199No
98Upp113873-0.195-0.4183No
99Irf814343-0.216-0.4382No
100Bst214683-0.235-0.4508Yes
101Ifi4414721-0.237-0.4476Yes
102Tnfaip214815-0.243-0.4473Yes
103Psma214869-0.246-0.4448Yes
104Gch114969-0.249-0.4446Yes
105Gpr1815013-0.252-0.4414Yes
106St3gal515029-0.253-0.4367Yes
107Ddx6015035-0.253-0.4315Yes
108Casp315203-0.263-0.4346Yes
109Stat215246-0.266-0.4310Yes
110Parp1215274-0.268-0.4267Yes
111Sod215468-0.277-0.4308Yes
112Trim2515552-0.281-0.4291Yes
113Itgb715669-0.289-0.4289Yes
114Isg2015683-0.290-0.4234Yes
115Sppl2a15685-0.290-0.4172Yes
116Xaf115775-0.294-0.4155Yes
117Il615835-0.298-0.4121Yes
118Mthfd215846-0.299-0.4062Yes
119Ptpn615892-0.302-0.4021Yes
120Isoc115933-0.306-0.3976Yes
121Cd7415966-0.308-0.3926Yes
122Tnfaip316008-0.311-0.3880Yes
123Cd4016099-0.317-0.3859Yes
124P2ry1416336-0.333-0.3911Yes
125Cd6916362-0.335-0.3852Yes
126Nfkbia16418-0.337-0.3808Yes
127Bank116495-0.343-0.3773Yes
128Vamp816555-0.347-0.3729Yes
129Nfkb116600-0.351-0.3677Yes
130Zbp116632-0.353-0.3617Yes
131Peli116724-0.360-0.3587Yes
132Psmb916988-0.380-0.3643Yes
133Fas17219-0.401-0.3676Yes
134Ccl517233-0.403-0.3596Yes
135Ogfr17283-0.407-0.3534Yes
136H2-DMa17293-0.408-0.3451Yes
137Tap117323-0.411-0.3378Yes
138Nlrc517418-0.418-0.3337Yes
139Sp11017428-0.419-0.3251Yes
140Irf117594-0.433-0.3244Yes
141Oas317830-0.458-0.3268Yes
142Bpgm17846-0.460-0.3177Yes
143Eif4e318044-0.489-0.3175Yes
144Casp118083-0.494-0.3088Yes
145Irf918194-0.511-0.3036Yes
146Trafd118208-0.513-0.2932Yes
147Isg1518272-0.525-0.2852Yes
148Ifi2718284-0.527-0.2744Yes
149Oas218307-0.531-0.2641Yes
150Oasl118312-0.533-0.2528Yes
151Vamp518448-0.558-0.2479Yes
152Psmb218488-0.565-0.2377Yes
153Il18bp18508-0.569-0.2265Yes
154Pnp18536-0.573-0.2155Yes
155Psmb818706-0.615-0.2111Yes
156Ifitm318804-0.646-0.2023Yes
157Ifnar218823-0.651-0.1892Yes
158Irf518843-0.656-0.1761Yes
159Lgals3bp18876-0.664-0.1634Yes
160Rtp418896-0.672-0.1499Yes
161Nmi18938-0.687-0.1373Yes
162Psme119082-0.775-0.1281Yes
163B2m19086-0.778-0.1114Yes
164Ly6e19088-0.779-0.0947Yes
165Ifi3519111-0.798-0.0787Yes
166Ifi3019189-0.868-0.0640Yes
167Icam119206-0.896-0.0455Yes
168Ifitm219293-1.151-0.0252Yes
169Batf219299-1.2030.0004Yes
Table: GSEA details [plain text format]



Fig 2: HALLMARK_INTERFERON_GAMMA_RESPONSE   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_INTERFERON_GAMMA_RESPONSE: Random ES distribution   
Gene set null distribution of ES for HALLMARK_INTERFERON_GAMMA_RESPONSE