DatasetMEP.MEP.mega_Pheno.cls
#Group1_versus_Group4.MEP.mega_Pheno.cls
#Group1_versus_Group4_repos
PhenotypeMEP.mega_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class0
GeneSetHALLMARK_G2M_CHECKPOINT
Enrichment Score (ES)0.24539033
Normalized Enrichment Score (NES)0.89752346
Nominal p-value0.58436215
FDR q-value0.88931507
FWER p-Value0.996
Table: GSEA Results Summary



Fig 1: Enrichment plot: HALLMARK_G2M_CHECKPOINT   
Profile of the Running ES Score & Positions of GeneSet Members on the Rank Ordered List

SYMBOLRANK IN GENE LISTRANK METRIC SCORERUNNING ESCORE ENRICHMENT
1Ccnd12260.7220.0052Yes
2Xpo12880.6900.0184Yes
3Hnrnpd3800.6430.0288Yes
4Cdc25b5840.5820.0319Yes
5Meis25970.5800.0450Yes
6Hnrnpu6990.5530.0528Yes
7Upf17250.5490.0644Yes
8Kpnb17540.5420.0758Yes
9Tfdp110500.4910.0720Yes
10Suv39h111290.4800.0792Yes
11Sqle12680.4600.0829Yes
12Sfpq13210.4510.0908Yes
13Chek116370.4150.0841Yes
14Srsf116380.4140.0939Yes
15Lmnb117160.4030.0994Yes
16Smad318000.3950.1044Yes
17Bub118540.3900.1108Yes
18Mcm618750.3880.1190Yes
19Fbxo519840.3790.1223Yes
20Rad2121770.3630.1208Yes
21Ewsr122510.3570.1254Yes
22Numa122620.3560.1333Yes
23Amd123650.3490.1362Yes
24Chaf1a23670.3490.1444Yes
25Mapk1424130.3450.1502Yes
26Map3k2024420.3430.1569Yes
27Efna526620.3280.1532Yes
28Nek226950.3260.1592Yes
29Incenp27780.3180.1624Yes
30Hif1a27970.3160.1690Yes
31Nsd228210.3140.1752Yes
32Pole28550.3120.1808Yes
33Hspa828590.3110.1880Yes
34Slc12a230640.2990.1844Yes
35Nasp30680.2990.1913Yes
36Dr130860.2970.1974Yes
37Uck232470.2860.1958Yes
38Prc132950.2820.2000Yes
39Syncrip33330.2790.2047Yes
40Lbr35860.2650.1978Yes
41Kif2336070.2640.2030Yes
42Rpa236190.2630.2086Yes
43Cul4a38430.2480.2028Yes
44Abl138920.2450.2061Yes
45Tnpo239100.2440.2110Yes
46Cul139400.2430.2152Yes
47Mcm339980.2390.2178Yes
48Tent4a40030.2390.2233Yes
49Mcm241890.2310.2191Yes
50Espl142560.2280.2210Yes
51Dbf442610.2280.2262Yes
52Ddx39a43500.2240.2269Yes
53Kif1143820.2220.2305Yes
54Mybl244840.2170.2303Yes
55Smarcc145010.2160.2346Yes
56Srsf1045340.2140.2380Yes
57Prpf4b48820.1950.2244Yes
58Hira49230.1930.2269Yes
59Ilf350090.1900.2269Yes
60Cdk152770.1780.2172Yes
61Tacc352890.1770.2208Yes
62Prim252990.1770.2245Yes
63Ccnt153640.1730.2252Yes
64Srsf254690.1680.2237Yes
65Slc7a555130.1650.2254Yes
66Gins255350.1640.2282Yes
67Nup9855700.1620.2302Yes
68Kif2c55940.1610.2328Yes
69Exo156000.1610.2364Yes
70Cdc656440.1580.2379Yes
71Cdc4557480.1530.2361Yes
72Tra2b57740.1510.2384Yes
73Smc1a58050.1490.2403Yes
74Kif2258100.1490.2436Yes
75Fancc59040.1450.2422Yes
76Cenpf59090.1440.2454Yes
77Slc38a162040.1300.2331No
78Ythdc162740.1270.2325No
79Brca264540.1200.2260No
80Cul567560.1120.2129No
81Rbl167760.1110.2145No
82Ccnf68510.1070.2131No
83Cul368770.1060.2143No
84Plk169960.1000.2105No
85Pds5b70530.0980.2099No
86Ttk71390.0940.2077No
87Tmpo71590.0930.2089No
88Rad23b71610.0930.2110No
89Racgap172490.0890.2086No
90Top2a73780.0820.2038No
91Nolc173860.0820.2054No
92E2f274020.0810.2065No
93Mcm574800.0790.2044No
94Cdc25a75250.0760.2039No
95Mtf275390.0760.2050No
96Kif5b75750.0740.2049No
97G3bp176240.0710.2041No
98Wrn76790.0690.2029No
99Rad54l77970.0630.1982No
100Cdc778060.0630.1993No
101Casp8ap278280.0620.1997No
102Aurka79940.0540.1923No
103Polq81360.0490.1861No
104Cdkn2c81770.0470.1851No
105Odf282690.0420.1813No
106Aurkb82900.0410.1813No
107Orc587430.0240.1582No
108Hmmr87930.0220.1561No
109Stmn188450.0200.1539No
110Orc689010.0170.1514No
111E2f389500.0150.1493No
112Ss1891310.0070.1400No
113Cdc2792340.0020.1347No
114Kif492800.0000.1324No
115H2bc129442-0.0020.1240No
116Pafah1b19450-0.0020.1237No
117Bard19550-0.0050.1186No
118Ezh29552-0.0060.1187No
119Marcks9571-0.0060.1179No
120Rasal29851-0.0190.1038No
121Lig39952-0.0240.0991No
122Atrx10535-0.0500.0698No
123Cdkn1b10549-0.0510.0703No
124Notch210580-0.0520.0700No
125Kif1510654-0.0550.0675No
126Dkc110714-0.0580.0658No
127Mki6710722-0.0590.0668No
128Odc110787-0.0620.0649No
129Stil10812-0.0630.0652No
130Kif20b10899-0.0670.0622No
131Mnat110919-0.0680.0628No
132Tpx210921-0.0680.0644No
133Slc7a111097-0.0750.0570No
134Ccna211098-0.0750.0588No
135Ncl11109-0.0750.0600No
136Chmp1a11176-0.0790.0584No
137Arid4a11327-0.0860.0526No
138Jpt111540-0.0950.0438No
139Gspt111571-0.0970.0445No
140Ccnb211793-0.1070.0355No
141Snrpd111840-0.1090.0357No
142Rps6ka511920-0.1130.0342No
143Stag112170-0.1230.0241No
144Pttg112234-0.1250.0237No
145Egf12371-0.1310.0197No
146Tle312494-0.1360.0165No
147Cenpe12613-0.1410.0137No
148Meis112718-0.1460.0117No
149Cbx112776-0.1480.0122No
150E2f412851-0.1520.0119No
151Plk412926-0.1550.0117No
152Dmd13119-0.1630.0055No
153Pml13171-0.1660.0068No
154Smc413201-0.1670.0092No
155Hus113254-0.1690.0105No
156Pola213293-0.1710.0125No
157E2f113424-0.1750.0099No
158Ube2c13545-0.1810.0079No
159Ctcf13624-0.1840.0081No
160Katna113654-0.1850.0110No
161Sap3013945-0.1990.0005No
162Nup5014011-0.2020.0019No
163Top114195-0.209-0.0028No
164Smc214272-0.213-0.0017No
165Dtymk14279-0.2130.0030No
166Pbk14528-0.227-0.0046No
167Hmgb314552-0.228-0.0004No
168Knl114585-0.2300.0033No
169Foxn314795-0.242-0.0019No
170Atf515248-0.266-0.0192No
171Cdkn315560-0.282-0.0289No
172Prmt515696-0.290-0.0291No
173Ube2s15878-0.301-0.0314No
174Bcl315930-0.305-0.0269No
175Tgfb116301-0.329-0.0384No
176Traip16442-0.339-0.0378No
177Cdk416469-0.341-0.0311No
178Kmt5a16520-0.345-0.0255No
179Ndc8016525-0.345-0.0176No
180Birc516545-0.347-0.0104No
181Troap16664-0.355-0.0082No
182Cks1b16716-0.359-0.0023No
183Cks217001-0.381-0.0082No
184H2az117047-0.386-0.0014No
185H2ax17299-0.408-0.0049No
186Nusap117341-0.4130.0027No
187Cdc2017537-0.4280.0026No
188Mad2l117659-0.4380.0066No
189Cenpa17917-0.4700.0043No
190Bub318153-0.5050.0040No
191Pura18386-0.5450.0047No
192Myc18395-0.5480.0172No
193H2az218703-0.6140.0157No
194Hmga1b18893-0.6710.0217No
Table: GSEA details [plain text format]



Fig 2: HALLMARK_G2M_CHECKPOINT   
Blue-Pink O' Gram in the Space of the Analyzed GeneSet



Fig 3: HALLMARK_G2M_CHECKPOINT: Random ES distribution   
Gene set null distribution of ES for HALLMARK_G2M_CHECKPOINT