Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	MEP.MEP.mega_Pheno.cls #Group1_versus_Group4.MEP.mega_Pheno.cls #Group1_versus_Group4_repos
Phenotype	MEP.mega_Pheno.cls#Group1_versus_Group4_repos
Upregulated in class	3
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.24380916
Normalized Enrichment Score (NES)	-1.1037538
Nominal p-value	0.30390143
FDR q-value	0.58186084
FWER p-Value	0.962

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Gpx3	91	0.847	0.0185	No
2	Ccnd1	226	0.722	0.0313	No
3	F2r	448	0.619	0.0367	No
4	Cdc25b	584	0.582	0.0456	No
5	Jun	632	0.572	0.0588	No
6	Slc20a1	874	0.519	0.0605	No
7	Etf1	925	0.510	0.0718	No
8	Brca1	962	0.505	0.0838	No
9	Mgmt	1346	0.448	0.0761	No
10	Ppp3r1	1822	0.393	0.0620	No
11	Rhob	1979	0.380	0.0643	No
12	Mmp2	2039	0.373	0.0714	No
13	Erbb3	2255	0.356	0.0700	No
14	Igfbp6	2526	0.335	0.0651	No
15	Pak1	2545	0.335	0.0733	No
16	Atf3	2561	0.334	0.0817	No
17	Bgn	2983	0.305	0.0681	No
18	Ctnnb1	3012	0.303	0.0749	No
19	App	3023	0.302	0.0827	No
20	Pmaip1	3079	0.297	0.0879	No
21	Madd	3098	0.296	0.0951	No
22	Cdk2	3189	0.290	0.0984	No
23	Tnf	3294	0.282	0.1007	No
24	Tgfb2	3301	0.281	0.1081	No
25	Cav1	3337	0.279	0.1139	No
26	Sptan1	3359	0.278	0.1204	No
27	Timp3	3548	0.268	0.1179	No
28	Bid	3576	0.266	0.1238	No
29	Hmox1	3717	0.256	0.1235	No
30	Cth	3982	0.240	0.1163	No
31	Mcl1	4731	0.203	0.0828	No
32	Wee1	4878	0.196	0.0806	No
33	Casp2	4949	0.192	0.0822	No
34	Dnajc3	4971	0.190	0.0863	No
35	Fdxr	5582	0.161	0.0589	No
36	Cyld	5742	0.153	0.0548	No
37	Gna15	6271	0.127	0.0307	No
38	Dffa	6279	0.127	0.0338	No
39	Bnip3l	6602	0.119	0.0203	No
40	Aifm3	6673	0.116	0.0198	No
41	Pdcd4	6930	0.104	0.0093	No
42	Txnip	7330	0.084	-0.0092	No
43	Top2a	7378	0.082	-0.0094	No
44	Gpx4	7467	0.079	-0.0118	No
45	Nefh	7595	0.073	-0.0165	No
46	Bcap31	7689	0.069	-0.0194	No
47	Bcl2l2	7741	0.066	-0.0203	No
48	Btg3	8485	0.034	-0.0581	No
49	Ptk2	8489	0.034	-0.0574	No
50	Cdkn1a	8757	0.023	-0.0707	No
51	Bax	8801	0.021	-0.0723	No
52	Gsn	9010	0.013	-0.0828	No
53	Gsr	9520	-0.004	-0.1093	No
54	Tnfsf10	9631	-0.009	-0.1148	No
55	Psen1	9644	-0.009	-0.1151	No
56	Gstm2	9670	-0.010	-0.1162	No
57	Casp8	9785	-0.016	-0.1217	No
58	Il1b	9946	-0.023	-0.1294	No
59	Btg2	10015	-0.028	-0.1322	No
60	Cd38	10194	-0.036	-0.1405	No
61	Vdac2	10252	-0.039	-0.1424	No
62	Dpyd	10292	-0.040	-0.1433	No
63	Lgals3	10328	-0.042	-0.1440	No
64	Rhot2	10396	-0.044	-0.1463	No
65	Cdkn1b	10549	-0.051	-0.1528	No
66	Casp7	10616	-0.053	-0.1548	No
67	Bcl2l1	10725	-0.059	-0.1588	No
68	Smad7	10799	-0.063	-0.1609	No
69	Ccnd2	11143	-0.077	-0.1767	No
70	Rela	11220	-0.081	-0.1785	No
71	Birc3	11263	-0.083	-0.1784	No
72	Lmna	11305	-0.085	-0.1782	No
73	Dnm1l	11391	-0.089	-0.1802	No
74	Xiap	11439	-0.091	-0.1802	No
75	Add1	11549	-0.096	-0.1833	No
76	Timp2	11738	-0.105	-0.1902	No
77	Bmp2	11796	-0.107	-0.1902	No
78	Bmf	12082	-0.119	-0.2019	No
79	Ank	12157	-0.123	-0.2024	No
80	Il18	12162	-0.123	-0.1992	No
81	Casp9	12552	-0.139	-0.2157	No
82	Psen2	12558	-0.139	-0.2122	No
83	Cflar	12811	-0.150	-0.2212	No
84	Lef1	12862	-0.152	-0.2196	No
85	Crebbp	12902	-0.154	-0.2174	No
86	Diablo	12916	-0.155	-0.2139	No
87	Satb1	13022	-0.158	-0.2150	No
88	Ppt1	13047	-0.160	-0.2119	No
89	F2	13271	-0.170	-0.2189	No
90	Clu	13421	-0.175	-0.2219	No
91	Casp4	13642	-0.185	-0.2283	No
92	Ddit3	13716	-0.188	-0.2269	No
93	Bik	13995	-0.201	-0.2359	No
94	Egr3	14078	-0.206	-0.2346	No
95	Igf2r	14256	-0.212	-0.2380	Yes
96	Anxa1	14304	-0.215	-0.2346	Yes
97	Sat1	14352	-0.217	-0.2311	Yes
98	Dap3	14480	-0.224	-0.2316	Yes
99	Pea15a	14511	-0.226	-0.2270	Yes
100	Plcb2	14536	-0.227	-0.2220	Yes
101	Il1a	14593	-0.230	-0.2186	Yes
102	Cd44	14655	-0.234	-0.2154	Yes
103	Rara	14676	-0.234	-0.2100	Yes
104	Ebp	14677	-0.234	-0.2036	Yes
105	Gch1	14969	-0.249	-0.2120	Yes
106	Casp3	15203	-0.263	-0.2169	Yes
107	Casp6	15401	-0.274	-0.2197	Yes
108	Sod2	15468	-0.277	-0.2155	Yes
109	Retsat	15504	-0.279	-0.2097	Yes
110	Rock1	15572	-0.283	-0.2055	Yes
111	Sc5d	15633	-0.287	-0.2008	Yes
112	Ppp2r5b	15634	-0.287	-0.1929	Yes
113	Ier3	15663	-0.289	-0.1864	Yes
114	Isg20	15683	-0.290	-0.1795	Yes
115	Il6	15835	-0.298	-0.1792	Yes
116	Cd69	16362	-0.335	-0.1975	Yes
117	Dap	16475	-0.342	-0.1940	Yes
118	Dnaja1	16493	-0.343	-0.1855	Yes
119	Hmgb2	16737	-0.360	-0.1883	Yes
120	Bcl2l11	16761	-0.363	-0.1795	Yes
121	Bcl10	16795	-0.365	-0.1713	Yes
122	Tnfrsf12a	16835	-0.369	-0.1632	Yes
123	Gadd45a	17123	-0.394	-0.1674	Yes
124	Fas	17219	-0.401	-0.1614	Yes
125	Tap1	17323	-0.411	-0.1555	Yes
126	Dcn	17327	-0.411	-0.1444	Yes
127	Krt18	17496	-0.425	-0.1415	Yes
128	Rnasel	17521	-0.427	-0.1311	Yes
129	Irf1	17594	-0.433	-0.1229	Yes
130	Eno2	17623	-0.434	-0.1125	Yes
131	Tgfbr3	17651	-0.437	-0.1019	Yes
132	Hgf	17673	-0.439	-0.0910	Yes
133	Sod1	17704	-0.442	-0.0804	Yes
134	Casp1	18083	-0.494	-0.0866	Yes
135	H1f0	18090	-0.495	-0.0734	Yes
136	Tspo	18289	-0.528	-0.0693	Yes
137	Gadd45b	18400	-0.548	-0.0600	Yes
138	Nedd9	18611	-0.590	-0.0548	Yes
139	Gpx1	18652	-0.601	-0.0404	Yes
140	Ifngr1	18658	-0.603	-0.0242	Yes
141	Ifitm3	18804	-0.646	-0.0140	Yes
142	Pdgfrb	18994	-0.717	-0.0043	Yes
143	Sqstm1	19048	-0.750	0.0135	Yes