Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MEP.MEP.mega_Pheno.cls #Group1_versus_Group2.MEP.mega_Pheno.cls #Group1_versus_Group2_repos
Phenotype	MEP.mega_Pheno.cls#Group1_versus_Group2_repos
Upregulated in class	1
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	-0.28847507
Normalized Enrichment Score (NES)	-1.0801477
Nominal p-value	0.35714287
FDR q-value	1.0
FWER p-Value	0.97

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Bgn	45	0.889	0.0264	No
2	Abi3bp	306	0.635	0.0334	No
3	Nid2	509	0.563	0.0411	No
4	Bmp1	667	0.524	0.0498	No
5	Pcolce	805	0.496	0.0587	No
6	Lama1	951	0.471	0.0664	No
7	Fbln1	963	0.469	0.0810	No
8	Col7a1	968	0.468	0.0959	No
9	Loxl1	1621	0.384	0.0744	No
10	Tpm2	1825	0.366	0.0756	No
11	Mcm7	1839	0.365	0.0868	No
12	Gpc1	1906	0.359	0.0949	No
13	Il15	2007	0.349	0.1010	No
14	Fgf2	2065	0.343	0.1091	No
15	Gem	2398	0.317	0.1021	No
16	Lrp1	2493	0.310	0.1072	No
17	Tfpi2	2534	0.307	0.1151	No
18	Slc6a8	2895	0.285	0.1055	No
19	Vcam1	3201	0.266	0.0982	No
20	Plod3	3267	0.262	0.1033	No
21	Flna	3999	0.220	0.0723	No
22	Sntb1	4048	0.217	0.0768	No
23	Myl9	4432	0.198	0.0632	No
24	Igfbp4	4509	0.194	0.0655	No
25	Tpm1	4644	0.187	0.0645	No
26	Gja1	4680	0.186	0.0687	No
27	Cdh2	4746	0.182	0.0712	No
28	Capg	5500	0.148	0.0367	No
29	Lamc1	5509	0.147	0.0411	No
30	Dab2	5747	0.138	0.0332	No
31	Cald1	5782	0.137	0.0358	No
32	Cap2	5793	0.136	0.0397	No
33	Itgb1	5989	0.128	0.0337	No
34	Pvr	6349	0.114	0.0186	No
35	Gadd45a	6987	0.090	-0.0117	No
36	Cxcl5	7004	0.090	-0.0096	No
37	Pdgfrb	7048	0.088	-0.0090	No
38	Jun	7239	0.081	-0.0163	No
39	Fas	7275	0.079	-0.0155	No
40	Mylk	7614	0.068	-0.0310	No
41	Plod2	7857	0.059	-0.0417	No
42	Comp	7890	0.058	-0.0415	No
43	Fstl1	8205	0.047	-0.0563	No
44	Id2	8264	0.045	-0.0579	No
45	Colgalt1	8321	0.043	-0.0594	No
46	Copa	8629	0.034	-0.0744	No
47	Pfn2	8634	0.034	-0.0735	No
48	Glipr1	9268	0.012	-0.1061	No
49	Lama2	9541	0.003	-0.1202	No
50	Sgcb	9663	-0.000	-0.1265	No
51	Plod1	9692	-0.001	-0.1279	No
52	Itga2	9819	-0.005	-0.1343	No
53	Tgfb1	9845	-0.006	-0.1354	No
54	Tagln	10064	-0.014	-0.1464	No
55	Notch2	10084	-0.014	-0.1469	No
56	Sdc1	10322	-0.023	-0.1585	No
57	P3h1	10415	-0.026	-0.1625	No
58	Rhob	10460	-0.027	-0.1639	No
59	Wipf1	10688	-0.035	-0.1746	No
60	Tpm4	10691	-0.035	-0.1736	No
61	Fap	10854	-0.040	-0.1807	No
62	Itgb5	10965	-0.044	-0.1851	No
63	Col16a1	10983	-0.044	-0.1845	No
64	Serpinh1	11071	-0.048	-0.1875	No
65	Fuca1	11283	-0.055	-0.1968	No
66	Slit3	11309	-0.056	-0.1963	No
67	Spock1	11320	-0.056	-0.1950	No
68	Serpine2	11487	-0.062	-0.2016	No
69	Basp1	11613	-0.067	-0.2060	No
70	Magee1	11614	-0.067	-0.2038	No
71	Vegfc	11649	-0.068	-0.2034	No
72	Emp3	11889	-0.077	-0.2133	No
73	Efemp2	11950	-0.080	-0.2139	No
74	Fstl3	11969	-0.081	-0.2122	No
75	Thbs1	12047	-0.084	-0.2135	No
76	Lgals1	12055	-0.084	-0.2112	No
77	Eno2	12230	-0.090	-0.2173	No
78	Edil3	12378	-0.095	-0.2219	No
79	Itga5	12446	-0.097	-0.2222	No
80	Itgb3	12496	-0.099	-0.2216	No
81	Col1a1	12552	-0.102	-0.2212	No
82	Fn1	12697	-0.108	-0.2252	No
83	Cd44	12726	-0.109	-0.2231	No
84	Calu	13049	-0.120	-0.2360	No
85	Mmp14	13144	-0.123	-0.2369	No
86	Sfrp1	13315	-0.130	-0.2416	No
87	Slit2	13616	-0.142	-0.2526	No
88	Timp3	13633	-0.143	-0.2489	No
89	Ecm2	14147	-0.164	-0.2703	No
90	Lama3	14279	-0.170	-0.2716	No
91	Tgm2	14434	-0.178	-0.2739	No
92	Fbn2	14570	-0.184	-0.2750	No
93	Sat1	14716	-0.190	-0.2764	No
94	Col4a1	14840	-0.196	-0.2765	No
95	Adam12	14866	-0.197	-0.2714	No
96	Ntm	14929	-0.201	-0.2682	No
97	Pmepa1	15319	-0.220	-0.2814	Yes
98	Ppib	15365	-0.223	-0.2765	Yes
99	Thbs2	15451	-0.227	-0.2736	Yes
100	Ecm1	15498	-0.230	-0.2685	Yes
101	Fbn1	15540	-0.231	-0.2632	Yes
102	Sgcd	15758	-0.244	-0.2666	Yes
103	Fzd8	15814	-0.246	-0.2616	Yes
104	Nt5e	15938	-0.253	-0.2598	Yes
105	Gpx7	16008	-0.258	-0.2550	Yes
106	Mest	16028	-0.259	-0.2476	Yes
107	Vegfa	16093	-0.264	-0.2424	Yes
108	Cadm1	16431	-0.285	-0.2508	Yes
109	Matn2	16503	-0.289	-0.2451	Yes
110	Thy1	16577	-0.295	-0.2394	Yes
111	Dst	16764	-0.307	-0.2391	Yes
112	Vcan	16993	-0.325	-0.2405	Yes
113	Qsox1	17035	-0.329	-0.2320	Yes
114	Cdh11	17145	-0.338	-0.2268	Yes
115	Fermt2	17202	-0.343	-0.2186	Yes
116	Dcn	17214	-0.344	-0.2080	Yes
117	Pmp22	17269	-0.347	-0.1996	Yes
118	Vim	17293	-0.349	-0.1895	Yes
119	Itgav	17566	-0.373	-0.1917	Yes
120	Gadd45b	17641	-0.380	-0.1832	Yes
121	Mmp2	17651	-0.381	-0.1713	Yes
122	Tgfbr3	17995	-0.416	-0.1758	Yes
123	Col4a2	18256	-0.447	-0.1749	Yes
124	Col1a2	18280	-0.450	-0.1615	Yes
125	Sparc	18362	-0.462	-0.1508	Yes
126	Col11a1	18368	-0.463	-0.1361	Yes
127	Tnfaip3	18481	-0.480	-0.1264	Yes
128	Tgfbi	18597	-0.505	-0.1160	Yes
129	Col5a1	18965	-0.604	-0.1156	Yes
130	Anpep	18986	-0.614	-0.0968	Yes
131	Sfrp4	19090	-0.664	-0.0807	Yes
132	Il6	19208	-0.767	-0.0620	Yes
133	Tnfrsf12a	19255	-0.844	-0.0371	Yes
134	Plaur	19303	-1.228	0.0002	Yes