Details for gene set HALLMARK

Table: GSEA Results Summary

Dataset	MEP.MEP.mega_Pheno.cls #Group1_versus_Group2.MEP.mega_Pheno.cls #Group1_versus_Group2_repos
Phenotype	MEP.mega_Pheno.cls#Group1_versus_Group2_repos
Upregulated in class	1
GeneSet	HALLMARK_APOPTOSIS
Enrichment Score (ES)	-0.23984762
Normalized Enrichment Score (NES)	-1.1219331
Nominal p-value	0.25101215
FDR q-value	1.0
FWER p-Value	0.952

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Bgn	45	0.889	0.0276	No
2	Timp2	249	0.662	0.0394	No
3	Tnf	533	0.557	0.0434	No
4	Gpx3	573	0.549	0.0599	No
5	Ccnd1	620	0.533	0.0755	No
6	Bid	1373	0.411	0.0501	No
7	Hmox1	1498	0.398	0.0571	No
8	Cav1	1907	0.359	0.0479	No
9	Gpx4	1926	0.357	0.0590	No
10	F2r	2091	0.341	0.0620	No
11	Cd38	2104	0.340	0.0728	No
12	Cdk2	2354	0.322	0.0707	No
13	Ccnd2	2585	0.305	0.0690	No
14	Igfbp6	2964	0.280	0.0587	No
15	Tnfsf10	3143	0.270	0.0585	No
16	Casp7	3463	0.249	0.0503	No
17	Gna15	3633	0.239	0.0496	No
18	Txnip	3649	0.238	0.0568	No
19	Cdc25b	3704	0.235	0.0619	No
20	Ank	3861	0.227	0.0614	No
21	Dnajc3	4208	0.207	0.0504	No
22	Ctnnb1	4294	0.204	0.0528	No
23	Gsr	4318	0.203	0.0585	No
24	Lef1	4366	0.201	0.0628	No
25	Bcl2l11	4493	0.195	0.0628	No
26	Vdac2	4537	0.193	0.0670	No
27	Sod2	4628	0.188	0.0687	No
28	Fdxr	4819	0.178	0.0648	No
29	Plcb2	5020	0.169	0.0601	No
30	Wee1	5041	0.168	0.0647	No
31	Mgmt	5338	0.154	0.0545	No
32	Ptk2	5481	0.149	0.0521	No
33	Lmna	6306	0.117	0.0130	No
34	Satb1	6588	0.105	0.0019	No
35	Casp9	6878	0.094	-0.0100	No
36	Gadd45a	6987	0.090	-0.0126	No
37	Pdgfrb	7048	0.088	-0.0127	No
38	Gsn	7075	0.087	-0.0111	No
39	Jun	7239	0.081	-0.0169	No
40	Fas	7275	0.079	-0.0161	No
41	Casp2	7283	0.079	-0.0138	No
42	Ppp3r1	7290	0.079	-0.0114	No
43	Pak1	7358	0.076	-0.0123	No
44	Dffa	7447	0.073	-0.0145	No
45	Il18	7569	0.069	-0.0184	No
46	Bax	7690	0.065	-0.0225	No
47	Madd	7733	0.064	-0.0225	No
48	Krt18	7790	0.061	-0.0234	No
49	Rela	8360	0.042	-0.0517	No
50	Brca1	8389	0.042	-0.0517	No
51	Cdkn1a	8434	0.040	-0.0527	No
52	Ier3	8467	0.039	-0.0530	No
53	Slc20a1	8660	0.033	-0.0619	No
54	Cth	8983	0.021	-0.0780	No
55	Nefh	9085	0.018	-0.0826	No
56	Igf2r	9088	0.018	-0.0821	No
57	Dnm1l	9452	0.006	-0.1009	No
58	Cflar	9494	0.005	-0.1029	No
59	Bnip3l	9728	-0.002	-0.1149	No
60	Add1	9800	-0.005	-0.1185	No
61	Tap1	9806	-0.005	-0.1186	No
62	Erbb3	9833	-0.006	-0.1198	No
63	F2	9906	-0.008	-0.1232	No
64	Rnasel	10148	-0.017	-0.1352	No
65	Xiap	10244	-0.020	-0.1395	No
66	Rhob	10460	-0.027	-0.1498	No
67	Ifitm3	10568	-0.031	-0.1544	No
68	Sod1	10747	-0.036	-0.1624	No
69	Bmf	10899	-0.041	-0.1689	No
70	Bcap31	10964	-0.043	-0.1708	No
71	Casp3	11057	-0.047	-0.1740	No
72	Nedd9	11193	-0.052	-0.1793	No
73	Dnaja1	11303	-0.055	-0.1831	No
74	Rhot2	11324	-0.056	-0.1823	No
75	Birc3	11348	-0.057	-0.1815	No
76	Psen2	11597	-0.067	-0.1922	No
77	Pdcd4	11701	-0.070	-0.1953	No
78	Clu	12148	-0.088	-0.2156	No
79	Gpx1	12226	-0.090	-0.2165	No
80	Eno2	12230	-0.090	-0.2137	No
81	Crebbp	12282	-0.091	-0.2132	No
82	Rock1	12298	-0.092	-0.2109	No
83	Dap	12334	-0.094	-0.2096	No
84	Cd44	12726	-0.109	-0.2263	No
85	Ppp2r5b	12730	-0.110	-0.2228	No
86	Psen1	12753	-0.110	-0.2202	No
87	App	12755	-0.110	-0.2165	No
88	Bik	12806	-0.112	-0.2154	No
89	Dap3	12855	-0.113	-0.2140	No
90	Bcl2l2	12983	-0.118	-0.2167	No
91	Atf3	12989	-0.119	-0.2129	No
92	Etf1	13261	-0.127	-0.2228	No
93	Isg20	13329	-0.131	-0.2219	No
94	Cdkn1b	13407	-0.134	-0.2214	No
95	Cyld	13427	-0.134	-0.2178	No
96	Timp3	13633	-0.143	-0.2237	No
97	Bcl10	13696	-0.145	-0.2221	No
98	Egr3	14038	-0.161	-0.2344	Yes
99	Gstm2	14087	-0.162	-0.2315	Yes
100	Mcl1	14124	-0.163	-0.2278	Yes
101	Casp8	14247	-0.169	-0.2285	Yes
102	Ebp	14250	-0.169	-0.2229	Yes
103	Tspo	14283	-0.171	-0.2188	Yes
104	Il1a	14376	-0.176	-0.2177	Yes
105	Sptan1	14597	-0.184	-0.2229	Yes
106	Ppt1	14693	-0.189	-0.2215	Yes
107	Sat1	14716	-0.190	-0.2163	Yes
108	H1f0	14725	-0.190	-0.2103	Yes
109	Gch1	14855	-0.196	-0.2104	Yes
110	Dpyd	14873	-0.197	-0.2046	Yes
111	Lgals3	15028	-0.206	-0.2057	Yes
112	Btg3	15259	-0.217	-0.2104	Yes
113	Diablo	15322	-0.220	-0.2062	Yes
114	Top2a	15350	-0.222	-0.2001	Yes
115	Hmgb2	15509	-0.230	-0.2006	Yes
116	Btg2	15551	-0.232	-0.1949	Yes
117	Bmp2	15845	-0.247	-0.2018	Yes
118	Ddit3	15904	-0.251	-0.1964	Yes
119	Pea15a	16033	-0.260	-0.1943	Yes
120	Hgf	16174	-0.269	-0.1925	Yes
121	Rara	16229	-0.272	-0.1862	Yes
122	Sc5d	16346	-0.280	-0.1828	Yes
123	Aifm3	16684	-0.303	-0.1901	Yes
124	Smad7	16888	-0.316	-0.1901	Yes
125	Ifngr1	16931	-0.321	-0.1814	Yes
126	Tgfb2	16990	-0.325	-0.1735	Yes
127	Bcl2l1	17114	-0.335	-0.1686	Yes
128	Anxa1	17120	-0.336	-0.1576	Yes
129	Dcn	17214	-0.344	-0.1508	Yes
130	Casp1	17234	-0.346	-0.1401	Yes
131	Retsat	17442	-0.363	-0.1387	Yes
132	Gadd45b	17641	-0.380	-0.1362	Yes
133	Mmp2	17651	-0.381	-0.1238	Yes
134	Tgfbr3	17995	-0.416	-0.1277	Yes
135	Irf1	18157	-0.434	-0.1214	Yes
136	Casp6	18613	-0.509	-0.1280	Yes
137	Pmaip1	18854	-0.571	-0.1212	Yes
138	Casp4	18909	-0.583	-0.1044	Yes
139	Sqstm1	18967	-0.605	-0.0869	Yes
140	Cd69	19181	-0.739	-0.0731	Yes
141	Il1b	19189	-0.746	-0.0483	Yes
142	Il6	19208	-0.767	-0.0234	Yes
143	Tnfrsf12a	19255	-0.844	0.0027	Yes