Details for gene set HALLMARK_EPITHELIAL_MESENCHYMAL

Table: GSEA Results Summary

Dataset	MEP.MEP.ery_Pheno.cls #Group6_versus_Group8.MEP.ery_Pheno.cls #Group6_versus_Group8_repos
Phenotype	MEP.ery_Pheno.cls#Group6_versus_Group8_repos
Upregulated in class	4
GeneSet	HALLMARK_EPITHELIAL_MESENCHYMAL_TRANSITION
Enrichment Score (ES)	0.36962888
Normalized Enrichment Score (NES)	1.3052783
Nominal p-value	0.0945674
FDR q-value	0.7692801
FWER p-Value	0.748

Table: GSEA details [plain text format]
	SYMBOL	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	Thy1	13	1.189	0.0269	Yes
2	Fbln5	18	1.119	0.0526	Yes
3	Col4a2	115	0.887	0.0695	Yes
4	Lama1	178	0.817	0.0861	Yes
5	Tpm4	229	0.774	0.1021	Yes
6	Thbs2	312	0.725	0.1158	Yes
7	Vcam1	338	0.712	0.1313	Yes
8	Sdc4	352	0.703	0.1471	Yes
9	Fn1	471	0.663	0.1581	Yes
10	Slc6a8	565	0.637	0.1694	Yes
11	Plaur	573	0.633	0.1837	Yes
12	Fbln2	602	0.626	0.1971	Yes
13	Igfbp2	731	0.592	0.2061	Yes
14	Cadm1	732	0.592	0.2197	Yes
15	Lama2	798	0.578	0.2307	Yes
16	Col4a1	913	0.551	0.2392	Yes
17	Fas	1204	0.510	0.2404	Yes
18	Lgals1	1314	0.498	0.2479	Yes
19	Fermt2	1479	0.477	0.2529	Yes
20	Tnfrsf12a	1536	0.470	0.2617	Yes
21	Spock1	1617	0.460	0.2694	Yes
22	Tagln	1745	0.447	0.2751	Yes
23	Gem	1854	0.436	0.2812	Yes
24	Magee1	1907	0.431	0.2892	Yes
25	Gm21451	1919	0.430	0.2987	Yes
26	Fbn2	2553	0.377	0.2844	Yes
27	Col7a1	2666	0.368	0.2888	Yes
28	Ecm1	2764	0.361	0.2936	Yes
29	Inhba	2830	0.356	0.2994	Yes
30	Dst	2876	0.352	0.3059	Yes
31	Sfrp1	2885	0.351	0.3137	Yes
32	Tnc	2935	0.348	0.3199	Yes
33	Sntb1	2956	0.346	0.3271	Yes
34	Tpm2	3010	0.343	0.3331	Yes
35	Col12a1	3018	0.342	0.3407	Yes
36	Thbs1	3067	0.339	0.3468	Yes
37	Nt5e	3116	0.336	0.3528	Yes
38	Edil3	3187	0.329	0.3578	Yes
39	Lamc1	3192	0.329	0.3653	Yes
40	Vegfa	3278	0.323	0.3696	Yes
41	Acta2	3520	0.307	0.3679	No
42	Calu	3749	0.293	0.3663	No
43	Col3a1	4218	0.268	0.3555	No
44	Tfpi2	4503	0.252	0.3509	No
45	Cald1	4546	0.250	0.3552	No
46	Crlf1	5027	0.230	0.3430	No
47	Tgfbi	5089	0.227	0.3460	No
48	Lamc2	5166	0.223	0.3484	No
49	Col6a2	5254	0.219	0.3502	No
50	Gadd45b	5276	0.218	0.3545	No
51	Prrx1	5504	0.209	0.3510	No
52	Anpep	5510	0.209	0.3557	No
53	Col6a3	5660	0.203	0.3549	No
54	Col11a1	5725	0.200	0.3572	No
55	Jun	6000	0.191	0.3516	No
56	Copa	6029	0.190	0.3550	No
57	Lama3	6342	0.178	0.3477	No
58	Cdh6	6458	0.174	0.3475	No
59	Col8a2	6529	0.172	0.3489	No
60	Aplp1	6654	0.168	0.3483	No
61	Cap2	6707	0.166	0.3502	No
62	Lrp1	6760	0.164	0.3521	No
63	Gpc1	7102	0.154	0.3432	No
64	Vegfc	7807	0.132	0.3206	No
65	Cd44	8081	0.125	0.3135	No
66	Plod3	8082	0.125	0.3164	No
67	Pcolce	8508	0.114	0.3035	No
68	Ecm2	8551	0.113	0.3046	No
69	Plod2	8582	0.112	0.3061	No
70	Oxtr	8862	0.105	0.2983	No
71	Mfap5	9170	0.097	0.2894	No
72	Gja1	9361	0.093	0.2846	No
73	Fgf2	9780	0.084	0.2713	No
74	Sat1	10259	0.074	0.2555	No
75	P3h1	10528	0.068	0.2474	No
76	Tgfb1	10638	0.066	0.2449	No
77	Itga2	11071	0.058	0.2305	No
78	Itgav	11132	0.057	0.2296	No
79	Areg	11363	0.052	0.2224	No
80	Matn3	11821	0.043	0.2067	No
81	Vim	12088	0.038	0.1979	No
82	Pdgfrb	12740	0.026	0.1748	No
83	Wipf1	13110	0.019	0.1618	No
84	Flna	13262	0.017	0.1567	No
85	Col5a3	13287	0.016	0.1562	No
86	Il15	13311	0.016	0.1557	No
87	Timp1	13352	0.015	0.1546	No
88	Mest	13415	0.014	0.1526	No
89	Pmepa1	13434	0.013	0.1523	No
90	Tgfbr3	13718	0.008	0.1421	No
91	Dpysl3	13738	0.008	0.1416	No
92	Slit2	14145	0.001	0.1268	No
93	Matn2	14158	0.000	0.1264	No
94	Tnfaip3	14306	-0.000	0.1211	No
95	Serpine2	14336	-0.001	0.1200	No
96	Efemp2	15088	-0.014	0.0930	No
97	Sgcg	15252	-0.017	0.0874	No
98	Colgalt1	15555	-0.023	0.0769	No
99	Notch2	15626	-0.024	0.0749	No
100	Tpm1	16128	-0.034	0.0575	No
101	Cthrc1	16489	-0.041	0.0453	No
102	Bdnf	16624	-0.043	0.0414	No
103	Eno2	16692	-0.044	0.0400	No
104	Serpine1	16731	-0.045	0.0396	No
105	Itgb1	17082	-0.052	0.0281	No
106	Sfrp4	17102	-0.053	0.0286	No
107	Mgp	17125	-0.053	0.0290	No
108	Cdh11	17392	-0.058	0.0207	No
109	Timp3	17437	-0.059	0.0204	No
110	Bgn	17492	-0.061	0.0199	No
111	Sparc	17795	-0.067	0.0104	No
112	Rhob	17997	-0.071	0.0047	No
113	Adam12	18005	-0.072	0.0061	No
114	Itga5	18038	-0.072	0.0066	No
115	Il6	18091	-0.074	0.0064	No
116	Serpinh1	18094	-0.074	0.0080	No
117	Tgm2	18107	-0.074	0.0093	No
118	Fbn1	18118	-0.074	0.0106	No
119	Col5a1	18228	-0.076	0.0084	No
120	Pmp22	18374	-0.080	0.0050	No
121	Fzd8	18476	-0.083	0.0032	No
122	Vcan	18587	-0.085	0.0012	No
123	Sgcd	18805	-0.089	-0.0047	No
124	Pfn2	19280	-0.101	-0.0196	No
125	Qsox1	19614	-0.110	-0.0292	No
126	Cxcl5	19689	-0.111	-0.0294	No
127	Glipr1	19838	-0.115	-0.0321	No
128	Col1a2	19977	-0.117	-0.0344	No
129	Mcm7	20885	-0.141	-0.0642	No
130	Abi3bp	20993	-0.144	-0.0648	No
131	Pvr	21132	-0.149	-0.0664	No
132	Sdc1	21430	-0.158	-0.0736	No
133	Igfbp4	21736	-0.168	-0.0809	No
134	Fuca1	21741	-0.168	-0.0771	No
135	Plod1	21865	-0.173	-0.0776	No
136	Sgcb	22010	-0.176	-0.0788	No
137	Gadd45a	22474	-0.193	-0.0913	No
138	Id2	22668	-0.200	-0.0937	No
139	Fstl1	23639	-0.240	-0.1235	No
140	Cxcl12	23720	-0.244	-0.1208	No
141	Comp	23801	-0.246	-0.1181	No
142	Pdlim4	23929	-0.253	-0.1169	No
143	Mmp14	24018	-0.257	-0.1141	No
144	Ppib	24192	-0.264	-0.1144	No
145	Spp1	24246	-0.267	-0.1101	No
146	Pcolce2	24260	-0.267	-0.1045	No
147	Bmp1	24261	-0.267	-0.0983	No
148	Loxl1	24390	-0.274	-0.0966	No
149	Nid2	24581	-0.284	-0.0970	No
150	Fbln1	24586	-0.284	-0.0906	No
151	Eln	24838	-0.297	-0.0929	No
152	Dcn	24931	-0.302	-0.0893	No
153	Emp3	25121	-0.313	-0.0890	No
154	Myl9	25266	-0.322	-0.0868	No
155	Col1a1	25385	-0.331	-0.0835	No
156	Mylk	25600	-0.346	-0.0833	No
157	Fap	25691	-0.354	-0.0784	No
158	Htra1	26115	-0.391	-0.0848	No
159	Gpx7	26126	-0.391	-0.0762	No
160	Mmp2	26176	-0.397	-0.0688	No
161	Capg	26194	-0.398	-0.0603	No
162	Itgb3	26237	-0.403	-0.0525	No
163	Basp1	26359	-0.418	-0.0473	No
164	Dab2	26383	-0.420	-0.0384	No
165	Col16a1	26526	-0.439	-0.0335	No
166	Col5a2	26708	-0.466	-0.0294	No
167	Ntm	26711	-0.466	-0.0187	No
168	Slit3	26829	-0.483	-0.0118	No
169	Fstl3	27108	-0.544	-0.0094	No
170	Cdh2	27177	-0.565	0.0011	No
171	Itgb5	27322	-0.621	0.0102	No